Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01443 ATGGAAGAAATGGAGGTTCCTGCCCTTTTCCTCTGCCCAGTTTCTTTGCAGCTCATGAGAGACCCCGTGACAGTGTGCACAGGAATCACATATGACAGAGAAAACATTGAGAGATGGCTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCATTCACAATGCCTGGCTTGGACTTGAAACCTTTTCATCTCCAAAGACAACCATTGACCAAACTCAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCCGAAAAACAGCTCAACTGTCTTAGTAGGCTTCAATATATTGCTTTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCTGGGGCAATAGATTTCTTGGCATCCACCATGATGATAAACTCAACTGTTATGAGTGAAGCAGCTATAGAAGTCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAATGAAGGGACTCAGTTTGTTGTGTCTTTGCTTCATGTATTGAAGCTTGGAAATTGCCAATCTCGAGGTTATACAACTTTGCTATTGAAGTCAGCATTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACGGCAGAGGTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCAGTAGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCGTGGGGCAGGAACAAGATCAAAGCAGTGGAGTGTGGTGGGGTTTTAGTCCTCGTTGAGCTACTTCTTGACGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGAGAAACTTTGTGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGGCAAAGAAAATTTTGAGGGTGTCCCCAGTTGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACACCTAGAGTTCTTCATGAAATGCTGCTACTTGGGGCAGTATCAAAGTTGTGTTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCTAGGGAGACACTCAAATTGCACTCTCTAGTTTGGAGGAATTCCACATGTATTCCTGCCCCTTTGCTTGCATCCTATCCATGA 1200 0.4392 MEEMEVPALFLCPVSLQLMRDPVTVCTGITYDRENIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLQRLIQAWCIHNAWLGLETFSSPKTTIDQTQIVKLLLEAKKFPEKQLNCLSRLQYIAFESESNKICLESAGAIDFLASTMMINSTVMSEAAIEVMFHLNPSESQLKNLMNNEGTQFVVSLLHVLKLGNCQSRGYTTLLLKSAFKVASPTQLNNVTAEVFVEIIRVLRDQISVEASKAALKLLVELCSWGRNKIKAVECGGVLVLVELLLDVSERRACELMLIALEKLCGCAEGRAELVNHGAGVAVVAKKILRVSPVASDRGVKILTSICRHSATPRVLHEMLLLGAVSKLCLVLQVEGCFKAKERARETLKLHSLVWRNSTCIPAPLLASYP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01443 399 CDD RING-Ubox_PUB 7 61 IPR045210 -
Phac11g01443 399 SUPERFAMILY ARM repeat 108 361 IPR016024 -
Phac11g01443 399 Gene3D - 77 384 IPR011989 -
Phac11g01443 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Phac11g01443 399 PANTHER WDSAM1 PROTEIN 2 391 IPR045185 GO:0061630
Phac11g01443 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Phac11g01443 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Phac11g01443 399 SUPERFAMILY RING/U-box 3 82 - -
Phac11g01443 399 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01443 Phac-Chr11 11618567 11620120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01443 2 399 U-box Gene Family AT2G35930 50.495 4.75e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01443 - - gmx:100778012 556.984