Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01442 ATGGCAGAAGTTGAAATTCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGGATTACATATGATAGAGAAGGCATAGAGGAGTGGTTGCGTAAGGCCAAACATTGTGTTTGTCCTGTTACCAAACAATCACTTCCAAGGAGCACTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATTCAAGCTTGGTGTTCAGCAAACACAGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTGTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCCACACAAAGCCAGAGGAACAGAACTTGCATGGCTGAGGCTGGTGTAGCCAGGGCCATGGTCAAAGTGATTAACAAGAATTTCAAAGATGGAAACACAAACACCAGTTCCGTACAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAATCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCTTTGACTTGGATTTTGAAGCATCATTTAGATGACAACAACATCAAGATGGTAAACGAAGCAATGCCCCTTTTAAAGTTGACAATCGAAGTTGCTGACTCAACCCTTTTGGGAAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGCTTTGAGAAAAAGAGCACTATCTCAACAAACTATCAAATCTGCTTTGCATGTGCTTATACAAACTAGCCTTTTGGGTAGAAACAGGACGAGGATTGTTGAAGCAGGTGCAGTCACACAACTCATAGAGCTCGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCTCATCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTGTAAGACATGCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCTTCAAATACGGTTGTTCTAGAGATGCTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCCTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAACTCTATTTGTTTACCAGGCACCAAAGGTGA 1233 0.4307 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDREGIEEWLRKAKHCVCPVTKQSLPRSTQYLTPNHTLRRLIQAWCSANTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSCGTSLEKLHALATQSQRNRTCMAEAGVARAMVKVINKNFKDGNTNTSSVQEALRIVHLLWNNHSSMKPLVGESLDFINSLTWILKHHLDDNNIKMVNEAMPLLKLTIEVADSTLLGNLSLEFFKEMVRALRKRALSQQTIKSALHVLIQTSLLGRNRTRIVEAGAVTQLIELELEKPEKNMTELIFNLLAHLCSCADGREQFVRHAAGIAVVSKRVLRVSAATDDRAIHVFSVIAKFSASNTVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01442 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
Phac11g01442 410 SUPERFAMILY RING/U-box 3 84 - -
Phac11g01442 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Phac11g01442 410 Gene3D - 103 396 IPR011989 -
Phac11g01442 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Phac11g01442 410 CDD RING-Ubox_PUB 7 59 IPR045210 -
Phac11g01442 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Phac11g01442 410 SUPERFAMILY ARM repeat 115 388 IPR016024 -
Phac11g01442 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01442 Phac-Chr11 11584434 11586053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01442 3 400 U-box Gene Family AT2G35930 38.861 1.63e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01442 - - gmx:100787426 682.174