Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01424 ATGTCGGCCCCGCGCGCTCCCTCCGCCGCAGCCGCCACCGCCTCCTCCAATCCGCCCGATCAGATCATGCACTCCATGAAACGCCAACTACCCTTCTCCTCCATGAAACCGCCCTTCGCAGCCGCAGGAGACTACCACCGTTTCGCTCCTGACCACCGCCCCAGCCTCGACGCCGAAGCCGTGGTCGTCAAGACTCCCCAATTGAAACGAAAGAGTGAAGCGGCTGATTTTGAAGCTGATTCTGGTGACAGGATGACTCCTGGAACCACTGAACCAGCTAATAGTCCTTTTCGTACACCTGTATCAGGAAAGACAGGAAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGCTCTCCTTCTGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCAAGACCGGGAGAGGCTGATGATAATTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAATAATGAGAGGATGCTTTTTGTTACTGAGGAAGATATAAAAAATTTGCCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTGCACCCAAACTTCCATCTAGTCCAGATGTTAACAAACATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAAGGAATAGATGTTCAGGGACCAGATTTTCACGGGCCTAGTTCAGAGTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAGTGGAATGAACTGGATCCGCTTCAAGAAGATTACTGCATCACTCGCGAGAACACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1395 0.4616 MSAPRAPSAAAATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDHRPSLDAEAVVVKTPQLKRKSEAADFEADSGDRMTPGTTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERMLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVAPKLPSSPDVNKHQSTVVPEDRGKGIDVQGPDFHGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCITRENTSTPSHPSNVGEVLSSASKPTGG* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01424 464 MobiDBLite consensus disorder prediction 46 80 - -
Phac11g01424 464 MobiDBLite consensus disorder prediction 9 23 - -
Phac11g01424 464 MobiDBLite consensus disorder prediction 342 380 - -
Phac11g01424 464 Gene3D - 216 326 - -
Phac11g01424 464 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Phac11g01424 464 SUPERFAMILY E2F-DP heterodimerization region 222 326 IPR037241 -
Phac11g01424 464 CDD E2F_DD 220 326 IPR032198 GO:0046983
Phac11g01424 464 PANTHER TRANSCRIPTION FACTOR E2F 83 428 IPR015633 GO:0000978|GO:0006357
Phac11g01424 464 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Phac11g01424 464 MobiDBLite consensus disorder prediction 1 115 - -
Phac11g01424 464 Coils Coil 222 263 - -
Phac11g01424 464 Gene3D - 138 211 IPR036388 -
Phac11g01424 464 Coils Coil 160 180 - -
Phac11g01424 464 MobiDBLite consensus disorder prediction 439 464 - -
Phac11g01424 464 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Phac11g01424 464 FunFam E2F transcription factor 1 138 211 - -
Phac11g01424 464 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Phac11g01424 464 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01424 Phac-Chr11 11194675 11200881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01424 21 463 E2F-DP Transcription Factor Family AT5G22220 55.579 2.03e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac11g01424 E2F_CC-MB 2.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01424 K06620 - gmx:100819817 805.823