Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01396 ATGATAAACATCATGGAAGATCATCCACCTGGTTTCCGGTTCTTCCCAACAGAAGAAGAGCTTGTTGGGTTCTACCTGCACAACAAGCTAGAAGGTTTAAGAAATGCTGCTGCCATAGATAGAGTTATCCCAGTTGTTGATATCAATGCTCTGGAGCCCTGGAACCTCCCATCGCTTGCTGGGGAGCTTTGTCGTGGGGATACAGAGCAATGGTTTTTCTTTTCACCAGGGCAAGAGAGAGAAGCCAGAGGAGGGAGGCCTAGCAGAACAACAGCTTGTGGGTACTGGAAAGCTACTGGTTCCCCTGGCTATGTTTATTCTTCAGATAACAGAGTCATTGGGGTGAAGAAATCCATGGTCTTCTACAAAGGAAAAGCCCCTATGGGAAGAAAAACCAAATGGAAAATGAATGAGTACAAAGCTATCTCAGTTCCTCACCAATCCAACTCTGTCATCCCTGAGGTATACACAATTCGAAATTTTTCATAA 489 0.4479 MINIMEDHPPGFRFFPTEEELVGFYLHNKLEGLRNAAAIDRVIPVVDINALEPWNLPSLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYKAISVPHQSNSVIPEVYTIRNFS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01396 162 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Phac11g01396 162 Gene3D NAC domain 17 160 IPR036093 GO:0003677|GO:0006355
Phac11g01396 162 SUPERFAMILY NAC domain 5 147 IPR036093 GO:0003677|GO:0006355
Phac11g01396 162 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 143 - -
Phac11g01396 162 Pfam No apical meristem (NAM) protein 9 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01396 Phac-Chr11 10770845 10772242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01396 11 162 NAC Transcription Factor Family AT5G22380 65.789 1.54e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac11g01396 NAM 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01396 - - gmx:100781321 288.885