Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01386 ATGCCTCGGGGGAAAGCAAATTCTTCATCAGCTGCTAAGCCATCTGACTCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCAGAGGAAGCAATGGAAGAAGAAATTGAGTATGAAGAAGTAGAAGAAGAAGTGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGGAGGACCCAGAGGAGGTAGAAGTAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAGATTGAAGAAGTGGATGAAGATGATGCCATGCAAAACAATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAACATGCCGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGCGGCATTCCTCATGATGTCTCAAATGAGGATTTGAAATCTTTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAGGGAAAGCATCCCGGCGAGAACAAGGGATTTGGTTTTGTGACATTTAGAAGTGTGGATTTGGCTTCTAAAGCCATCGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAAATGTTCTACATCTCAAGCCAAACACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTGGAAGATCTAAGGAAGATTGTATCCGAGATTGGACCTGGAGTTACTGGTGTGGAACTTGTCAAGGATATGAAGAACACCAACAACAACCGTGGCTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAGTATTCTAAGCTAAAGATGATGAACCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCGAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAATGTTAGAGTGCTCTCTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGTATCAAACACACAGAAGCCGGGACCAGGATTGCTTCCAAGCTATCCACCACATGTTGGCTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCAGGATATCCTGCTCCAGGTCTTGCACAGCCCATGCTATATGGAGGTGGTCAAGGTCCCGCTGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCGCCATCCTCACATCATAGAGGTGGCCGGAGTGGTGGCAGTGGAGGTGGCAACAGGAATGCTGGCAGTTCTAGTAAGGGAAGGCACAACAATGATGGTGGTCAAGGGCGCAGATACCGCCCATATTAG 1539 0.4522 MPRGKANSSSAAKPSDSEKPVESDEKVDFEEENDPEEAMEEEIEYEEVEEEVEVEEIEEEVEEEEEEEDPEEVEVEEEEEEEEEEEEEEEEEIEEVDEDDAMQNNSSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDVSNEDLKSFCERIGEVAEVRVMKGKHPGENKGFGFVTFRSVDLASKAIEELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWGVEDLRKIVSEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMNPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQMLECSLAKPQSDQKSGVSNTQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYPAPGLAQPMLYGGGQGPAGMAMMPMLLADGRIGYVLQQPGMQPQAPSSHHRGGRSGGSGGGNRNAGSSSKGRHNNDGGQGRRYRPY* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01386 512 Gene3D - 213 293 IPR012677 -
Phac11g01386 512 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 504 - -
Phac11g01386 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 294 IPR000504 GO:0003723
Phac11g01386 512 SUPERFAMILY RNA-binding domain, RBD 300 396 IPR035979 GO:0003676
Phac11g01386 512 MobiDBLite consensus disorder prediction 382 400 - -
Phac11g01386 512 MobiDBLite consensus disorder prediction 464 512 - -
Phac11g01386 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Phac11g01386 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 375 IPR000504 GO:0003723
Phac11g01386 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 275 IPR000504 GO:0003723
Phac11g01386 512 MobiDBLite consensus disorder prediction 104 119 - -
Phac11g01386 512 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 213 293 - -
Phac11g01386 512 MobiDBLite consensus disorder prediction 27 103 - -
Phac11g01386 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Phac11g01386 512 MobiDBLite consensus disorder prediction 486 500 - -
Phac11g01386 512 MobiDBLite consensus disorder prediction 382 404 - -
Phac11g01386 512 SMART rrm1_1 307 380 IPR000504 GO:0003723
Phac11g01386 512 SMART rrm1_1 133 206 IPR000504 GO:0003723
Phac11g01386 512 SMART rrm1_1 213 290 IPR000504 GO:0003723
Phac11g01386 512 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 295 404 - -
Phac11g01386 512 Coils Coil 38 99 - -
Phac11g01386 512 SMART rrm2_1 307 380 IPR003954 GO:0003676
Phac11g01386 512 SMART rrm2_1 133 206 IPR003954 GO:0003676
Phac11g01386 512 Gene3D - 294 402 IPR012677 -
Phac11g01386 512 Gene3D - 58 212 IPR012677 -
Phac11g01386 512 CDD RRM_SF 134 206 - -
Phac11g01386 512 MobiDBLite consensus disorder prediction 1 119 - -
Phac11g01386 512 SUPERFAMILY RNA-binding domain, RBD 129 297 IPR035979 GO:0003676
Phac11g01386 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01386 Phac-Chr11 10620336 10626079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01386 134 469 Eukaryotic Initiation Factors Gene Family AT4G34110 24.734 4.10e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01386 K13161 - gmx:100806658 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01386 11 10620336 10626079 Phac11g01386 11 10620336 10626079 ECH