Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01362 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAGCCATGTTCTTCTCCTTCATTTCTAAATTCCAACACAATATCTTCTTCTTCTTCTTCTTCATCATCATCTTCTTCTTTTTCTTTCACTCAGCATGAGCTTGTTCATGAAACCATCCAATTCTTGCCCATTTTAAGTGAAAAGGCCTCAAAAGATGAAGACCATCATGGAGTACAAAGTTTTGAGGTGAAAGAGGAAAAAGTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCTTCATGAGGTTGTTGATGATGAGAAGGTGATTTTCCATGTCAAGGAAGAAGAAGAATCTTCCAAGAGAAGCTTCCAGGGATGCTCCTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGTAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGCTACTGCTGCGCTCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCACGGCACAAAGCCCTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTAGTACTGGCTCTGATGAAGATGAGGTTAATGCTCATCATCATGCATGA 975 0.4267 MECNVENNKNLYLHAPTFIEWLKPCSSPSFLNSNTISSSSSSSSSSSSFSFTQHELVHETIQFLPILSEKASKDEDHHGVQSFEVKEEKVEQVTVALHIGLPDSAKRLHEVVDDEKVIFHVKEEEESSKRSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECISTGSDEDEVNAHHHA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01362 324 SMART c2h2final6 242 262 IPR013087 -
Phac11g01362 324 SMART c2h2final6 205 237 IPR013087 -
Phac11g01362 324 SMART c2h2final6 158 180 IPR013087 -
Phac11g01362 324 SUPERFAMILY beta-beta-alpha zinc fingers 227 262 IPR036236 -
Phac11g01362 324 PANTHER ZINC FINGER PROTEIN WIP2 18 311 IPR043584 GO:0003700|GO:0010468
Phac11g01362 324 Gene3D Classic Zinc Finger 198 291 - -
Phac11g01362 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Phac11g01362 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 262 IPR013087 -
Phac11g01362 324 SUPERFAMILY beta-beta-alpha zinc fingers 149 181 IPR036236 -
Phac11g01362 324 Gene3D Classic Zinc Finger 157 180 - -
Phac11g01362 324 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Phac11g01362 324 FunFam Zinc finger protein WIP2 211 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01362 Phac-Chr11 10351991 10355668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01362 4 311 C2H2 Transcription Factor Family AT1G08290 56.232 3.71e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g01362 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01362 - - gmx:100802773 573.163