Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01344 ATGGGCGGCGATGGTCGGCGACGTGATCGGAGAGACACCAGAGCACCTAAGAAGCGGAAGCTGAACCGCAGCCCCGAGGATGAGCTCGAAGCTAAATTAGGGTTCGATCTGTTTTCAGAGGGCGAGAAGCGACTCGGATGGCTACTCACTCTTGCATCTTCATCTGTTGAGGATGAAAACAGTTACAAAGTATACAGTTGTGTGGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTACTTTTATGTAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGAAGACGTTATGAAGGTCAGATTGCTGATATTGAAATTATAGAGAAAGAAGACTTGAATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTACAACAATTGATGGACGTGAAGAAAGACCTGATGCCTTCAGTTGAAAGAAATAAGGCTAAATCTGATACTACAGAAGCCTTTGTGTCCATGTCAACAGAAAGAAGAGAACATAAACCTCAGGATTTTCTAGATTGCTTGACTGATCTTCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCAATTGACAGTGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCTAATAACGGGGTAACACTTGAGAAGAGGACTGATCTTCTACAGCGTGCAGAAGTTCGTGTATGTGCATTTGACATTGAGACCACGAAACTTCCATTAAAGTTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGATAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACTTACAATGGTGATTTTTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCTTGGGTTTAATATGAGCGATGAATTGGGATTCAAATGTGACACAAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGTCAAGGTCTGAAGGCTGTTACAAAAGCAAAGTTGGGATATGATCCATTGGAGGTGAATCCTGAAGACATGGTTCGATTTGCAAAGGAAAAGCCCCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACTTATTACTTATATACAACATATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCTATGCCACCAGATGAGGTTTTGCGTAAAGGTAGTGGAACCCTCTGCGAAATGTTGCTTATGGTGCAGGCATACAAGGCCAATGTTATATGCCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAATAATCGTCTTCTTGAGAGTGAGACTTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTTTTCAGATCTGATATTCCATCTAGTTTTACACTAGAGCCATCTGCTTATCAGCAACTGATCAACAACCTTGATCGAGATCTACAGTATGCTGTAACAGTGGAGGGTAAGATGGATTTGGAGTCTGTTTCTAATTATAATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTACAATTACGAGATGCACCAACACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAATCGACTTCAGCCACCATCAATTGTTACTGATGAAGTCTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGTAAGCTTGAGTGGGTCTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTCATCCCGCTATTCTGAGAAGAGGTCATCAAAATCTTTTCTTGACCTTCCCAAGACCGAGCAACAATCAAGACTGAAAGATCGTTTAAAGAAATACTGTCAGAAGGCATATAAGCGGGTACTCAACAAACCTGTAACTGAAGTTCGTGAAGCGGGAATCTGCATGCGTGAAAATCCGTTTTATGTTGATACTGTTCGCAGTTTCCGGGATAGAAGATACGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAATTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTCTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTATTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATAATCCAGAATGCTCGCTTGCTTGTAGAAAAAATAGGAAAACCACTTGAACTAGACACGGATGGTATTTGGTGTGCACTACCGGGATCCTTTCCGGAAAATTTTACTTTTAAAACAGAAGATTCAAAGAAGAAGTTTACAATATCATACCCTTGTGTTATGCTTAACGTTGATGTGGCAATAAATAATACAAATGATCAATATCAGACACTCACAGATCCAATGAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATATAAGGCAATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTAATTAAAAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAACTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAATTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACATTAGAAGAATGCTATTCAGCTGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATAGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGTGAGCGTGCTATTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATATCCGCAAATGGTGCAAGGTCTCGTGTGAAGTTGCCATTCGTTCGATAATTGATTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTGTTACTATTCCTGCTGCAATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTAGTTCATCCTGATTGGTTGCACAAGAAAGTTCGTGAGAAGGAGGACAGGTTTCGCCAACGGAAATTAGTTGATGTCTTTAAATCAATGAACAGGAATGAGCAGTCAAAAAAGCATAATGACTCAAATCGTGTCCCTCTTGTGATGGATGATGAGATTCTTAATGAGTTAGAGGACTTTGGAAACAAGAGTAGGAGTTCTACGCGCGGACCTAGACCAATTATAAGGCATTATGAAGCTAATAATGAACAAAATTCAAGGAAGCTCAGTGATCAACAAGATATGGAGCAAGAGCATAGTAAAGATAATAGCAGCAAGAAAAATGTACTTTCACCATTACAACAAAATGAAACATGTGAAAATGTAGACAGAACTGTTGATTATCAGGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAAATATCCTGGAAAGGAGAAAGAAGCAAAGATTGGAGAAATCAAAGACATCTAATCGTGTAAATGGTGTTTCTGAACAAGTGAGTGGTAAGAGGAATCCTGGCAGAAGTCATGTCAGTTCGTATCTTAAAAGGCTTGAGGTAGACTTAACGAAGTGTCACTGGCAGATAATACAACTAGTTCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTTGTTGTCGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCCCCAATTAATGAAGAATTTATTGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTATATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGTAAGCAAAAAACTTGCAACTCTTCTAGCGGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCAATAGTCCAGCTTGGTTGCGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTGAGTGAATTGCACATGAAGACCACGACAGAATGTGTTTATCTTGAACAATCTTTATCCTTCTTTTATTTGTACCACAGCATCTCTGAGGGGCGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATATCTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATCTCCGAATTTTCTTGAAAGACAATTTCATGATGCTTGCCAGACGTTGTCTATTGAGCCACCTCTGAGGAATGACATTAATTTTAAGGTGGACTATGTCGCACATGTCAAGGACGCTGAAACAGTGATGCAAAGAGCAATAAATGGTCACAGTCATGGGAGGGAAAATCATGTGCCTGTGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGTATCCGAGCTCTGGATGATTTTCCATGCCTGAGTATTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGGTAAAGTTGGAATGCAACGCTGTGCTGCATCGGTCCAATGGTTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCCAGGGAACTTTGAACTTGACTGGCTCATATTTATGGCAGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGGATTAATGACGAACATAGCTGTTTTATTGACGAGGTCCAACAACCTGTTCTTACTTATCCTGGAGCTTACAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAATACAGCCTAGTTAATGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCATGAACATGATTCTGGAGCATTTTCAATGAATGATCAGAATGGTTTTGACGAGTCTACCTCTTGTGCACACGCCTTTCGAGTTCTTAAGCAGTTGATCCAGCGGTGCCTAACAGACACAGTGACATCAGGAAATGTTTACGCTGATTCAATTTTGCAGCATCTATATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCCGCTCTCCACCAGCTACTCCACAAGGTCATGCAAAAGGTTTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACAGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGCGACAGTTTGTTAAGAACTATCCAATCTAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGTATACCAGCAAAATCTGATGAAGCCATGAATGATAAATCCCAAGTAGACATCATATCTAGCTGGAATATTGCTGAATACTTGCCAAAAAAAGTCCAAGACCATTTTGTTTACATCGTTTCCGAATTCATGTATATTCCCTGGAATTATGCACAAAACCAAGCACAAATCAGGGCCTCATTGCAGGATGGTGACACCTGTACTCCATCAATAAGCATTGGAACTGCAGTAGCTTTTGAATCAGAAATAACAGAATATATCAAAGGACAGATTAGCTCTTACTTCGCCGACAAACTGCTAGGAATTGTTCACCATATTGGTCTTCATATGAAGCGAGTGAGCAGATCAGAAAACAACCAGAGTATTTCACCAGGCCCTGAATTACACAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAGGAATTTGCTCAAATATGTTGATGTCAAAGAGTTTGCTCCAGAAGCCGAGTTTCATGATCCTTGTCATTCCTTCGTCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGAACTTGTGCCCGGATTCCGTTTCATTAACTGAGGAGTGGCGTTGTGCAGTGCCACAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGATTGTAAGACAAAGAGAACGACTATACCACCTGCAAGATCTGGTGTGTATCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCAGAGCAATGTGCATGTGCAGGCTCGTTTAGGTGCAAGGAAGATGCAAATGAATTTCGTAAAAAGATGCAGCTTTTTTTTAACATAGCATCTCGTCAGAAATTCCAGCTTCTCCAAGAATGTACCTCTTGGATTTTAGAACACAGTTTAAATTGA 6666 0.4019 MGGDGRRRDRRDTRAPKKRKLNRSPEDELEAKLGFDLFSEGEKRLGWLLTLASSSVEDENSYKVYSCVDLYFVTQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIEKEDLNLKNHLSGLRKSYLKLSFDTVQQLMDVKKDLMPSVERNKAKSDTTEAFVSMSTERREHKPQDFLDCLTDLREYDVPYHVRFAIDSDIRCGQWYDVGVSNNGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMIDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGFNMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAVTVEGKMDLESVSNYNEVKNAIMEKLVQLRDAPTREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSENNKSSSRYSEKRSSKSFLDLPKTEQQSRLKDRLKKYCQKAYKRVLNKPVTEVREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTEDSKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPMRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETDAEVMKFYIRKWCKVSCEVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVVHPDWLHKKVREKEDRFRQRKLVDVFKSMNRNEQSKKHNDSNRVPLVMDDEILNELEDFGNKSRSSTRGPRPIIRHYEANNEQNSRKLSDQQDMEQEHSKDNSSKKNVLSPLQQNETCENVDRTVDYQGWLQVKKRMWKNILERRKKQRLEKSKTSNRVNGVSEQVSGKRNPGRSHVSSYLKRLEVDLTKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSPINEEFIGKRVNKTLPHGRHSYNLYEVSINEIQYGEVSKKLATLLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTTECVYLEQSLSFFYLYHSISEGRAIYVGYFPASKAISVVVVNPYQNKDLSPNFLERQFHDACQTLSIEPPLRNDINFKVDYVAHVKDAETVMQRAINGHSHGRENHVPVVAVIECPNVQLVKLGIRALDDFPCLSIPYNARDSQYQILGWQQTAGKVGMQRCAASVQWLNQRIALSRYAHVPPGNFELDWLIFMADIFFSRALHDNQQVLWISDDGLPDLGGINDEHSCFIDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDQNGFDESTSCAHAFRVLKQLIQRCLTDTVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDKSQVDIISSWNIAEYLPKKVQDHFVYIVSEFMYIPWNYAQNQAQIRASLQDGDTCTPSISIGTAVAFESEITEYIKGQISSYFADKLLGIVHHIGLHMKRVSRSENNQSISPGPELHRGDAALEFIKHVCAVLALDQSVQHEVLVLRRNLLKYVDVKEFAPEAEFHDPCHSFVLSNVICSYCNDCRDLNLCPDSVSLTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCHQVKAAHLAEQCACAGSFRCKEDANEFRKKMQLFFNIASRQKFQLLQECTSWILEHSLN* 2222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01344 2221 FunFam DNA polymerase epsilon catalytic subunit 951 1135 - -
Phac11g01344 2221 Gene3D - 238 468 IPR036397 GO:0003676
Phac11g01344 2221 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Phac11g01344 2221 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 2218 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Phac11g01344 2221 MobiDBLite consensus disorder prediction 1 27 - -
Phac11g01344 2221 MobiDBLite consensus disorder prediction 1295 1314 - -
Phac11g01344 2221 SUPERFAMILY Ribonuclease H-like 65 490 IPR012337 -
Phac11g01344 2221 MobiDBLite consensus disorder prediction 1198 1255 - -
Phac11g01344 2221 MobiDBLite consensus disorder prediction 1220 1244 - -
Phac11g01344 2221 Pfam DNA polymerase family B 763 1080 IPR006134 GO:0000166|GO:0003677
Phac11g01344 2221 MobiDBLite consensus disorder prediction 1287 1314 - -
Phac11g01344 2221 MobiDBLite consensus disorder prediction 669 689 - -
Phac11g01344 2221 Gene3D DNA Polymerase, chain B, domain 1 49 228 - -
Phac11g01344 2221 CDD POLBc_epsilon 503 1132 - -
Phac11g01344 2221 CDD DNA_polB_epsilon_exo 240 443 - -
Phac11g01344 2221 Gene3D - 951 1135 IPR042087 -
Phac11g01344 2221 SMART polmehr3 239 852 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac11g01344 2221 Gene3D Palm domain of DNA polymerase 763 947 IPR023211 -
Phac11g01344 2221 Pfam Domain of unknown function (DUF1744) 1542 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Phac11g01344 2221 SUPERFAMILY DNA/RNA polymerases 469 1147 IPR043502 -
Phac11g01344 2221 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Phac11g01344 2221 FunFam DNA polymerase epsilon catalytic subunit 762 947 - -
Phac11g01344 2221 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Phac11g01344 2221 SMART DUF1744_2 1524 1910 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01344 Phac-Chr11 10062794 10086020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01344 1 2109 Core DNA Replication Machinery Family AT1G08260 69.176 0.0 2996
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01344 K02324 - gmx:100812003 4079.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01344 11 10062794 10086020 Phac11g01344 11 10062794 10086020 ECH