Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01317 ATGGAGCAACAGAATCTTTCAGACACCGATCAGTTTTTGGCTCTGGGCGCCACATCGGACGAGTCACAGAGTCCTAAGGAACCAGTGACGCATGTCCACGCCGCCGCAGACAATAACAACAATGTTGTAAACGCAGTCAATGTTGCAACTGGTCCTGCTTCTGGTTCTGAGCTTGTTGTGGCCGTACCAAACTCCGAGGCTGTAGGTTCGGGATTGGTGGTGAAGCGAGGAAGGGGGAGGCCGAGGAAGCATGAGGCTGTCGGGAACACGGCGTCTCCGTTGTCGGCGATGACGCCGGCGCCACCAGGATTTTCCAATCAGACCAAGAGAGGCAGGGGACGCCCTCGTGGTTCTGGGAAACTGCAGGCTATAGCTTCCATTGGTGGGTTTATGCAAGAAACAGCAGGGGGAAACTTCATACCTCACGCACTGAGTGTGCAAATTGGAGAGAATTTGGTAGGATTGATAATGTCCTTTTTTGAGAAATGCCCGCTTTCAGTTTGCATACTTTCTGCTACTGGTGCTATTTCAAATGTGACCATTCGTGAACATCCTCCCTCTAATCATGTTACGAGACTTGAGGGTACCTATGAGATATTGTCTTTATCAGGAACTTCTACCTTCGCTTGTGGCATTAATGGTCCAGTTCGTACAATTGGATTGTTGAGAATTTCAATTGCTAAATCTGATGGAAATGTTTTTGGGGGAATCCTTGAGAGTGCATTGGTAGCAGGTTGCCCTATTCAGCTTGTTATGGCCACTTTCAAGCAAAACATGAATAGTCAAATCAAGAGAAAACAATTGTTTGGATTTTCTAATGTCCCCCTTATGCTGGAAAGTCCAGATTCAGAAAGGGGTAAAATGAAAGTTCCAAAGTGGACAGAAGGTGAGAAGAGTTGTTCTTCACCACCACCAACAGGACTTGAACCAACAACAGTACCTGATTGTGTAGCAGAGAATGTGTTTTCTGCCACACCTAATGGAGGAACAGATAATGGTATTACTCCACACAATGTGCATTCTGCATGTTTTATTGGTGTTGATATGGACAACCAGGCTCCACAGTCTGCATCAGATGATTCAGATCAGAAGACTTCTGCAGACGAGAATGCAAATGTTATAGAATTATGA 1131 0.4598 MEQQNLSDTDQFLALGATSDESQSPKEPVTHVHAAADNNNNVVNAVNVATGPASGSELVVAVPNSEAVGSGLVVKRGRGRPRKHEAVGNTASPLSAMTPAPPGFSNQTKRGRGRPRGSGKLQAIASIGGFMQETAGGNFIPHALSVQIGENLVGLIMSFFEKCPLSVCILSATGAISNVTIREHPPSNHVTRLEGTYEILSLSGTSTFACGINGPVRTIGLLRISIAKSDGNVFGGILESALVAGCPIQLVMATFKQNMNSQIKRKQLFGFSNVPLMLESPDSERGKMKVPKWTEGEKSCSSPPPTGLEPTTVPDCVAENVFSATPNGGTDNGITPHNVHSACFIGVDMDNQAPQSASDDSDQKTSADENANVIEL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01317 376 MobiDBLite consensus disorder prediction 280 310 - -
Phac11g01317 376 CDD DUF296 141 255 IPR005175 -
Phac11g01317 376 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Phac11g01317 376 SMART AT_hook_2 75 87 IPR017956 GO:0003677
Phac11g01317 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 256 IPR005175 -
Phac11g01317 376 MobiDBLite consensus disorder prediction 76 118 - -
Phac11g01317 376 ProSiteProfiles PPC domain profile profile. 136 277 IPR005175 -
Phac11g01317 376 Gene3D - 141 272 - -
Phac11g01317 376 MobiDBLite consensus disorder prediction 91 105 - -
Phac11g01317 376 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Phac11g01317 376 PRINTS AT-hook-like domain signature 75 85 IPR017956 GO:0003677
Phac11g01317 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 348 IPR039605 GO:0003680
Phac11g01317 376 MobiDBLite consensus disorder prediction 1 28 - -
Phac11g01317 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 260 - -
Phac11g01317 376 MobiDBLite consensus disorder prediction 1 25 - -
Phac11g01317 376 MobiDBLite consensus disorder prediction 350 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01317 Phac-Chr11 9596100 9599692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01317 74 267 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 38.776 2.72e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01317 - - gsj:114378162 414.461