Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01316 ATGGAGGCGCCTGTAGCGAGACCCAGGGGGCGCCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAACGAAGCAAAGAAGCAGGCGTCCATGGGGACGCGAGCCGTGGCTTTAGTCGGAAGGTACGTTTTGAAAAATTTTCCCAGGAACGGAGTGTTCCTAGGAAAAGTAGTGTACTACGAGAGCGGTCTTTATAGAGTTTGTTATGAGGATGGCGATTCCGAGGACCTCGACAGTGGTGAGGTCCGGACTATACTAGTAAAAGAGGGTGGAATGGATGGTGATTTAGCGCGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATAGTGGAAAGATCGCAAATGGTTCACTGAAGAGACCAATTGAATCCATTAAGGAGGAATCTAGGGCTGGATTGTGTGACTTGAAGGATGGTGGATTGACGATTGAGAAAGATGAGGAAGAAGATGAGGAGGAGGAGGATGAGGATGTCAATTCTTCGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCCGAGTTGCCGGTGTCATCAGGTACTATCGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGGTCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACAAATTCATTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGACGGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCTTCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTTCTTTTACAATATTTGGTAGTCAGTGGACACACAAATTCTCATGAGTGGGAAGCATTTTACAAAGAGGTGTCCACTGTAGAATATTATGTACTTCCTGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACACTCGGAGAGAATCTGAGGTTGGCATGGATTATGATGGAGAAGATATCCTTCCTACAGAATTTGGGCTTAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCGTGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTTTATTTCATATTCCAGACATACAGAAAGTACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATCGGTGTGTTAAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTCGGAGCCCACCATTGCAAAGGGAACAACACTTCGAGGGGCTGAAACATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGTGAACATCTACTTGTGCTGAATATTGGCAGTGCTGAATCATGTCTTAGATACTACAATCAGAATGACATTCCCAAAGTTCTCCGAGTGCTTTATGCATCCATGCAGCACAGACCAATGTACCATGATATTTGCATGGCAGTGCTACAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATAGAAAGGAAGAGACAAAGTCATCTTCTTTTTTACTTCCTCCTTTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCTTTAACCTCTGTCAGTACGACTTACTGTGACAATATGGTGCCATCTCTAGATGCTTCATCAGTTTCCAGCCAAAGTTCTGCTCTTCAGTGTAATGGCAACGGTAGCAGTAGTGAGTGCCTTGTTGTGACTACAAAGCTTCTTGAGGACAGTAGGATGGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCGTCATTCCAATATGAACCATGGAAATTTTGATGATAGGCCAACAGTGGTAGATCCTGGCAAGTGCTCTTTGGTAAATAGTCAATTTAGTTATTATGGCCATGCAAATGATACAGGGTGTCCTATAAATATTTCTTTCCAAACCAAAGAAAGCACTCCAGCCACTTTTGAAAAGTGTGAACACAATGTAACCAATGGTTTTTCCTACATGGGTTTCTCCTATAAGCCTTTGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCTGCTGCTAAATTTGCCCTTCTTTCGTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTATCTGCTTCTCGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGGGAAAGGTGTGGCTGGTGCATTTCTTGCAAAGCGCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTATAAAAGTGCTTGCTGGTTTATCTCCTATAAGAAGTGTGGAGGGAGTACTCCCTAGTATCGCAACCTACATTATATACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGGAGGCAATGGCGTAAGCGTGTGGAACAGGCCACAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGACAATTTCTTTCTGTGGGGACTGGGTTAAGCTGATGGATGACTGTTTGGTTGAGTTTTCCATGGTACAAAGTGCCACATCTTCTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTCCAGCTGATGGTTGCCCTGAAAGCTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAAAAAGCGATCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGGCAAGGTGGTTCAAGAAAAATTTCTGCCATTTCTTATGCTGATGGCATTGATATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTAGAAATGAGTAGGAATGCATCCCAGCTCGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGCGACACTAAACTGGTAGAGGGGAAAAATCGTTATGGGATAGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTATTGAAATAGAGCAAGATCCTGAAGGAAAGGAGAAGTATTGGTTTTCCGAAGCACGAATTCCTCTATATTTGGTGAAAGAGTATGAAGAAGGTAAGGGAAACATGCCATATAATGGAGAGCAGCACTTGAATACTGCATCTGGGTTGCATAGAAAGCGGTTGAAAGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTGCCAAGTGTAATGCATGCCAAGGTTATTGTCACGAGGGTTGTTCCACAAATCCAATAGTCTCTGCAAATGAAGTTGAGTTCTTGAGAACGTGCAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGGACAGCTTTGAAGAGATCAAGGCCTAAAACTCTTGATCAAGTACAGAAATCTTCCAAGACAAAGGCTAAATGTTCTGAACAAGAATCAACTACTAGGATAAATGATAATCATCTTGATATGCAACAAGTTGCTTCTGTGGCCACTTCAGCTGGAAAGCGTCATCGCAAAAACTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGATAACAATGATTTCAAGCTCAGGAACATACTTTTGAAAGGGAGCTCAAACATACCAGAAGTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAGTAAGATTTTCTGTAGTAAATAG 4179 0.4281 MEAPVARPRGRPRKRRRNDEENENEAKKQASMGTRAVALVGRYVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRTILVKEGGMDGDLARRKEKLEELVSKNSGKIANGSLKRPIESIKEESRAGLCDLKDGGLTIEKDEEEDEEEEDEDVNSSSDSGTGLGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRRHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLLQYLVVSGHTNSHEWEAFYKEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNTRRESEVGMDYDGEDILPTEFGLRRVEPRYTFTSACEDKEATKFVSASNAVNQPGSFISYSRHTESTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMSEPTIAKGTTLRGAETFGKDLYGQLFMGTCEHLLVLNIGSAESCLRYYNQNDIPKVLRVLYASMQHRPMYHDICMAVLQYWSVPESLLFHSVSSGANVNSANRKEETKSSSFLLPPLGEGNLMKEEYPLTSVSTTYCDNMVPSLDASSVSSQSSALQCNGNGSSSECLVVTTKLLEDSRMESILSADSASVSVSRHSNMNHGNFDDRPTVVDPGKCSLVNSQFSYYGHANDTGCPINISFQTKESTPATFEKCEHNVTNGFSYMGFSYKPLSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLSASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSAIKVLAGLSPIRSVEGVLPSIATYIIYMEECLRGLVVGPFLSSIYRRQWRKRVEQATTFSAIKPLLLELEENIRTISFCGDWVKLMDDCLVEFSMVQSATSSLGTAQKRAPSGRRYKKRSAIDEAPADGCPESFVWWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISAISYADGIDIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNRYGIAFGSQKHLPSRVMKNVIEIEQDPEGKEKYWFSEARIPLYLVKEYEEGKGNMPYNGEQHLNTASGLHRKRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAAKCNACQGYCHEGCSTNPIVSANEVEFLRTCKQCYHARLLAQKENSNESPTSPLLLRGRENNSGTALKRSRPKTLDQVQKSSKTKAKCSEQESTTRINDNHLDMQQVASVATSAGKRHRKNCSWGIIWKKKNNEDNNDFKLRNILLKGSSNIPEVKPVCHLCRKPYMSDLMYICCETCQSKIFCSK* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01316 1392 Pfam PHD-finger 424 466 IPR019787 -
Phac11g01316 1392 ProSiteProfiles DDT domain profile. 198 258 IPR018501 -
Phac11g01316 1392 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 146 162 - -
Phac11g01316 1392 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 301 344 IPR028942 -
Phac11g01316 1392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 476 IPR013083 -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 1279 1298 - -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 14 28 - -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 142 191 - -
Phac11g01316 1392 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Phac11g01316 1392 SMART testlast3 198 258 IPR018501 -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 1251 1278 - -
Phac11g01316 1392 PANTHER PHD FINGER FAMILY PROTEIN 33 1387 - -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 1 31 - -
Phac11g01316 1392 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1200 1230 IPR017896 -
Phac11g01316 1392 SMART PHD_3 423 466 IPR001965 -
Phac11g01316 1392 SMART PHD_3 1193 1241 IPR001965 -
Phac11g01316 1392 SUPERFAMILY FYVE/PHD zinc finger 394 467 IPR011011 -
Phac11g01316 1392 CDD Tudor_AtPTM-like 40 87 IPR047365 -
Phac11g01316 1392 CDD PHD2_CHD_II 424 465 - -
Phac11g01316 1392 MobiDBLite consensus disorder prediction 1251 1298 - -
Phac11g01316 1392 Pfam DDT domain 199 255 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01316 Phac-Chr11 9520461 9539125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01316 288 557 EF-hand Containing Proteins AT5G22760 49.455 6.08e-75 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac11g01316 DDT 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01316 - - pvu:PHAVU_011G089300g 2279.98