Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01315 ATGGAGGCGCCTGTAGCGAGACCCAGGGGGCGCCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAACGAAGCAAAGAAGCAGGCGTCCATGGGGACGCGAGCCGTGGCTTTAGTCGGAAGGTACGTTTTGAAAAATTTTCCCAGGAACGGAGTGTTCCTAGGAAAAGTAGTGTACTACGAGAGCGGTCTTTATAGAGTTTGTTATGAGGATGGCGATTCCGAGGACCTCGACAGTGGTGAGGTCCGGACTATACTAGTAAAAGAGGGTGGAATGGATGGTGATTTAGCGCGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATAGTGGAAAGATCGCAAATGGTTCACTGAAGAGACCAATTGAATCCATTAAGGAGGAATCTAGGGCTGGATTGTGTGACTTGAAGGATGGTGGATTGACGATTGAGAAAGATGAGGAAGAAGATGAGGAGGAGGAGGATGAGGATGTCAATTCTTCGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCCGAGTTGCCGGTGTCATCAGGTACTATCGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGGTCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACAAATTCATTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGACGGCACCTTGAATTCCTCTCATCAGAGGGCTCAGAGCGAGCTTCAAGATGCCTAAGGTGCAATGAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTTCTTTTACAATATTTGGTAGTCAGTGGACACACAAATTCTCATGAGTGGGAAGCATTTTACAAAGAGGTGTCCACTGTAGAATATTATGTACTTCCTGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACACTCGGAGAGAATCTGAGGTTGGCATGGATTATGATGGAGAAGATATCCTTCCTACAGAATTTGGGCTTAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCGTGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTTTATTTCATATTCCAGACATACAGAAAGTACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATCGGTGTGTTAAAAAATCATATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTCGGAGCCCACCATTGCAAAGGGAACAACACTTCGAGGGGCTGAAACATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACTTGTGAACATCTACTTGTGCTGAATATTGGCAGTGCTGAATCATGTCTTAGATACTACAATCAGAATGACATTCCCAAAGTTCTCCGAGTGCTTTATGCATCCATGCAGCACAGACCAATGTACCATGATATTTGCATGGCAGTGCTACAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATAGAAAGGAAGAGACAAAGTCATCTTCTTTTTTACTTCCTCCTTTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCTTTAACCTCTGTCAGTACGACTTACTGTGACAATATGGTGCCATCTCTAGATGCTTCATCAGTTTCCAGCCAAAGTTCTGCTCTTCAGTGTAATGGCAACGGTAGCAGTAGTGAGTGCCTTGTTGTGACTACAAAGCTTCTTGAGGACAGTAGGATGGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTTCTGTTAGTCGTCATTCCAATATGAACCATGGAAATTTTGATGATAGGCCAACAGTGGTAGATCCTGGCAAGTGCTCTTTGGTAAATAGTCAATTTAGTTATTATGGCCATGCAAATGATACAGGGTGTCCTATAAATATTTCTTTCCAAACCAAAGAAAGCACTCCAGCCACTTTTGAAAAGTGTGAACACAATGTAACCAATGGTTTTTCCTACATGGGTTTCTCCTATAAGCCTTTGTCGTACATGAATTACTATATACATGGTGAATTTGCTGCATCAGCTGCTGCTAAATTTGCCCTTCTTTCGTCAGAGGAATCTAGGTCAGAGGGCCATGTGTCAGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTATCTGCTTCTCGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGGGAAAGGTGTGGCTGGTGCATTTCTTGCAAAGCGCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTATAAAAGTGCTTGCTGGTTTATCTCCTATAAGAAGTGTGGAGGGAGTACTCCCTAGTATCGCAACCTACATTATATACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGGAGGCAATGGCGTAAGCGTGTGGAACAGGCCACAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGACAATTTCTTTCTGTGGGGACTGGGTTAAGCTGATGGATGACTGTTTGGTTGAGTTTTCCATGGTACAAAGTGCCACATCTTCTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTCCAGCTGATGGTTGCCCTGAAAGCTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAAAAAGCGATCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGGCAAGGTGGTTCAAGAAAAATTTCTGCCATTTCTTATGCTGATGGCATTGATATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGCTGCTGTAGAAATGAGTAGGAATGCATCCCAGCTCGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGCGACACTAAACTGGTAGAGGGGAAAAATCGTTATGGGATAGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTATTGAAATAGAGCAAGATCCTGAAGGAAAGGAGAAGTATTGGTTTTCCGAAGCACGAATTCCTCTATATTTGGTGAAAGAGTATGAAGAAGGTAAGGGAAACATGCCATATAATGGAGAGCAGCACTTGAATACTGCATCTGGGTTGCATAGAAAGCGGTTGAAAGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTGCCAAGTGTAATGCATGCCAAGGTTATTGTCACGAGGGTTGTTCCACAAATCCAATAGTCTCTGCAAATGAAGTTGAGTTCTTGAGAACGTGCAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGGACAGCTTTGAAGAGATCAAGGCCTAAAACTCTTGATCAAGTACAGAAATCTTCCAAGACAAAGGCTAAATGTTCTGAACAAGAATCAACTACTAGGATAAATGATAATCATCTTGATATGCAACAAGTTGCTTCTGTGGCCACTTCAGCTGGAAAGCGTCATCGCAAAAACTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGATAACAATGATTTCAAGCTCAGGAACATACTTTTGAAAGGGAGCTCAAACATACCAGAAGTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATGTGAAGCCTGAGAGACCAGAGGGCAAAGGCAAAAAGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGCTGCTACTCCCGTCTTTCCTGTATATGATGATACTTCCGCCTTTTCTGTGGAGGATCCTAGTTCTGTATTTCCTGATGAGGATGATCCTCTTCTTTTCTCTCTCTCAAGTGTTGAACTGATAACAGAACCTAAGATTGATGAGGATATTGAGTGGAACAGTGTCAATGTCTCTGGGCCAGGGCTTCAGAAACTGGCAGTGAGAAGGAATGTTAAGAATGAGGGTGATGATGATTCTTTTGGAGGTGTTCCTTTGGATGCTGAATTCTCTACCTACGGTGGAGAGGCAGGTAATCTGTCCAATCCTGCAGAGGAATCTACATCTTTAGAATATGCCTCTGGTGTTGACTTAGACAACCAGCTGCCCAATGACTCTCAAAATGTAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACAGAACTGCTACAGTCAGATGATGGTGGTCAGTTTGAGGGAGTTGATATGTCTGGGGACTTGTCAGGATATATGGAAAATTCTAACACCACCCTTATTCCTGAATCGTGTGGAGGTGTTAGTTTGGCAGATAAATCAGAACCTACAACTTACACCGGCTATAGTTGTATGCAATGTTCGCAGATGGAACCAGCCCCTGATCTCCGTTGTGAGATTTGTGGGTTTCTGATTCACAGCCAATGTTCGCCTTGGGTTGAATTACCATCAATTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 5130 0.4298 MEAPVARPRGRPRKRRRNDEENENEAKKQASMGTRAVALVGRYVLKNFPRNGVFLGKVVYYESGLYRVCYEDGDSEDLDSGEVRTILVKEGGMDGDLARRKEKLEELVSKNSGKIANGSLKRPIESIKEESRAGLCDLKDGGLTIEKDEEEDEEEEDEDVNSSSDSGTGLGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRRHLEFLSSEGSERASRCLRCNEWSLLDPVTWPVFLLQYLVVSGHTNSHEWEAFYKEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNTRRESEVGMDYDGEDILPTEFGLRRVEPRYTFTSACEDKEATKFVSASNAVNQPGSFISYSRHTESTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMSEPTIAKGTTLRGAETFGKDLYGQLFMGTCEHLLVLNIGSAESCLRYYNQNDIPKVLRVLYASMQHRPMYHDICMAVLQYWSVPESLLFHSVSSGANVNSANRKEETKSSSFLLPPLGEGNLMKEEYPLTSVSTTYCDNMVPSLDASSVSSQSSALQCNGNGSSSECLVVTTKLLEDSRMESILSADSASVSVSRHSNMNHGNFDDRPTVVDPGKCSLVNSQFSYYGHANDTGCPINISFQTKESTPATFEKCEHNVTNGFSYMGFSYKPLSYMNYYIHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLSASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSAIKVLAGLSPIRSVEGVLPSIATYIIYMEECLRGLVVGPFLSSIYRRQWRKRVEQATTFSAIKPLLLELEENIRTISFCGDWVKLMDDCLVEFSMVQSATSSLGTAQKRAPSGRRYKKRSAIDEAPADGCPESFVWWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISAISYADGIDIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNRYGIAFGSQKHLPSRVMKNVIEIEQDPEGKEKYWFSEARIPLYLVKEYEEGKGNMPYNGEQHLNTASGLHRKRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAAKCNACQGYCHEGCSTNPIVSANEVEFLRTCKQCYHARLLAQKENSNESPTSPLLLRGRENNSGTALKRSRPKTLDQVQKSSKTKAKCSEQESTTRINDNHLDMQQVASVATSAGKRHRKNCSWGIIWKKKNNEDNNDFKLRNILLKGSSNIPEVKPVCHLCRKPYMSDLMYICCETCQNWYHAEAVELEESKLSSVLGFKCCKCRRIKSPVCPYSDVKPERPEGKGKKSRTKAKKEHSGADTDSGAISDMRECEAATPVFPVYDDTSAFSVEDPSSVFPDEDDPLLFSLSSVELITEPKIDEDIEWNSVNVSGPGLQKLAVRRNVKNEGDDDSFGGVPLDAEFSTYGGEAGNLSNPAEESTSLEYASGVDLDNQLPNDSQNVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSGDLSGYMENSNTTLIPESCGGVSLADKSEPTTYTGYSCMQCSQMEPAPDLRCEICGFLIHSQCSPWVELPSIGSWRCGHCREYGNN* 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01315 1709 MobiDBLite consensus disorder prediction 146 162 - -
Phac11g01315 1709 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 301 344 IPR028942 -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1424 1454 - -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 14 28 - -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 142 191 - -
Phac11g01315 1709 PANTHER PHD FINGER FAMILY PROTEIN 33 1670 - -
Phac11g01315 1709 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Phac11g01315 1709 SUPERFAMILY FYVE/PHD zinc finger 1360 1418 IPR011011 -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1251 1278 - -
Phac11g01315 1709 CDD Tudor_AtPTM-like 40 87 IPR047365 -
Phac11g01315 1709 CDD PHD2_CHD_II 424 465 - -
Phac11g01315 1709 Pfam DDT domain 199 255 IPR018501 -
Phac11g01315 1709 ProSiteProfiles DDT domain profile. 198 258 IPR018501 -
Phac11g01315 1709 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Phac11g01315 1709 Pfam PHD-finger 424 466 IPR019787 -
Phac11g01315 1709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1359 1418 IPR013083 -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1279 1300 - -
Phac11g01315 1709 SMART testlast3 198 258 IPR018501 -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1 31 - -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1251 1300 - -
Phac11g01315 1709 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1200 1230 IPR017896 -
Phac11g01315 1709 SUPERFAMILY FYVE/PHD zinc finger 394 467 IPR011011 -
Phac11g01315 1709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 476 IPR013083 -
Phac11g01315 1709 SMART PHD_3 423 466 IPR001965 -
Phac11g01315 1709 SMART PHD_3 1193 1241 IPR001965 -
Phac11g01315 1709 SMART PHD_3 1660 1704 IPR001965 -
Phac11g01315 1709 SMART PHD_3 1364 1412 IPR001965 -
Phac11g01315 1709 MobiDBLite consensus disorder prediction 1425 1449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01315 Phac-Chr11 9520461 9539125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01315 288 557 EF-hand Containing Proteins AT5G22760 49.455 1.80e-74 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phac11g01315 DDT 7.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01315 - - gmx:100808261 2335.07