Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01288 ATGGCGAACGATACAAATTCAGAACACTTTGTTGAATCGTATGGGGTTCGCATTGGTTTAAAGAGGGAATTTAACTTTGCTATGAAGTCACAGTCACAAATATGTGATTCTCTAGGTCGAACTCGATCGAAAAAGGCCCAAAATTTGGTTCAGGTCTCTACCAATTCCTCTCACAGGCGATACAAAAATGGTGCTGCTCTAAATGCGAAGGAAGTAAAGAGTGATTTGGTGGATGCAAAGAAATTTAGTCAAGTGTGTGACGAAACAACAATGTTTGTTGTTTGTGAAAAGGAGCACAAGAGTGATGAAACTAAAAACCAAGTGCAGAATGAATGTGAAAAGGAACACAAGAATGATGAACTTGAGACTGGGGTTATGCAAATGCAACCTGTTAGTGATAATGATAAGGTTAAGGAGGAAGGTGACACTAATGAGATTGTTCCAATTTTGGGTTGCCAGTTGGAAACCCCAATAAAGGGTATACAATCAACATTGAAAAAGTTAGAAAATGGTGATAGCAATGTTAAGAGTAATGGTGTTGATAAAGAAAGAAATAATGGTTCTATTATTACTATTTCAACTCCGAGAACATCTTCTAAAGGTTTTATGGAAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGGATTCTAGAAGGACTACTTGTGAAATATGTTCGTAGCATCAAGGTGAAATCTATAGGGCTTTTGGGAGTTGTTTCTGGCGTTGGAATTTTGTGTTATTGTGAAGTTTGTAAGAAGGTTGAGGTTGTGTCACCCACAGTTTTTGAGTTGCATGCTGGTAGTACAAACAAGCGTCCTCCGGAGTATATTTTCCTTGAGAATGGAAGTAGTCTTCGTGATGTCATGAATACATTTTTGAATACTCCATTAGACACTTTAGAGGAAGTTGTACAGAAGGTTTTGGGAGGTTTCACAATGAAGACATCTAAATTTTGTGTGAATTGTAGAGGTCTTAATGTCATATCAAAATTATTCTGTAATTCATGTGTGGAGCTATTAAAGGATTGTCAAGCTAGTCTCACCTTAGCAAATGACACCAATAATACCTCTGTACCAGTTGCAGTTCAACCCAGGTCTCCAAGATTAGTTGTACTTCCAAATTCATTAAGTCATGGAATGAAACATAATACATCTCATAAGAGCAAAGGAAGAATAACTAGGAAGGATCTGCGCTTGCATAAGCTGGTCTTTGAGAAAGATGGATTGCCAGATGGAACTGAAGTAGGATATTATATCCATGGAAAGAACTTATTAGCCGGTTACAAAAAGGGATTTGGAATTGTTTGTAGTTGTTGCAATAGTAAGGTCAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCGCGACGAAAGCCTATATGTAGAGATGGAGGAAATCTTTTGTGTTGTGATGGATGCCCAAGAGCCTTTCACATAGATTGTGTACCTCTCCCATATGTTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAGAATTTGTTTCAAAAGAGCAAATGTATCAAGTTTAATGAAAATGACAAGGCAGCAGGACAAGTTGAGGACATTGATCCCTCAGAGCAGATAAACCAAAGATGCATTCGTATTGTCAAAGAGTTTGAACTTGGTGGATGTGCATTGTGTAGAGACCAAGATTTCAGTAGAAGCTTTGGACCTCGAACAGTAATTATTTGTGATCAGTGTCAAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATGCAGAACATAGAGGAATTACCTGAAGGGGATTGGTTTTGCTGTTCAGATTGTGAGCATATTAATTCTACCTTGGTGAATTTGGTGGCTCGTGGAGAAGAGAATCTTCCAATTCCCCTCTTGAGTTTGATTAAAAAGAAATACAACGACAAAGGTTTAGAATTTGGGCTTGATATTGATATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTAAATCTGAGGAGACTAGACAATTGCTTTCAAAAGTTGCTGCTATTTTTCATGAGCGATTTAATCCAATAGTTCATACTACAACTGGCACGGATTACATTCCAACAATGCTTTTTGGAAGGAACATTAAAGGTGAAGACTTTAGTGGGATGTACTGTATGTTACTCACTGTCAATGAAGTGGTTGTATCTGCTGGAGTATTTCGTGTGTTTGGATCAGAACTGGCAGAACTTCCCTTGGTGGCAACTGTTACTGATTTTCAGGGACAGGGTTACTTCCAATCCCTGTTCTCTTGTATTGAGGGTTTGCTTGGATCATTAAAAGTGAAAAGGTTTGTTCTACCTTCTGCTGATGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAACTGGAACAAGATGAGATCAACAACTACTGGAAATATTATCACATGATGATCTTTCAAGGGTCTTCCTTATTGCAGAAGCAAATTCCTCAACTTTGA 2454 0.3794 MANDTNSEHFVESYGVRIGLKREFNFAMKSQSQICDSLGRTRSKKAQNLVQVSTNSSHRRYKNGAALNAKEVKSDLVDAKKFSQVCDETTMFVVCEKEHKSDETKNQVQNECEKEHKNDELETGVMQMQPVSDNDKVKEEGDTNEIVPILGCQLETPIKGIQSTLKKLENGDSNVKSNGVDKERNNGSIITISTPRTSSKGFMEKKFPSKLKDLLSSGILEGLLVKYVRSIKVKSIGLLGVVSGVGILCYCEVCKKVEVVSPTVFELHAGSTNKRPPEYIFLENGSSLRDVMNTFLNTPLDTLEEVVQKVLGGFTMKTSKFCVNCRGLNVISKLFCNSCVELLKDCQASLTLANDTNNTSVPVAVQPRSPRLVVLPNSLSHGMKHNTSHKSKGRITRKDLRLHKLVFEKDGLPDGTEVGYYIHGKNLLAGYKKGFGIVCSCCNSKVSPSQFEAHAGWASRRKPICRDGGNLLCCDGCPRAFHIDCVPLPYVPSGTWYCRYCQNLFQKSKCIKFNENDKAAGQVEDIDPSEQINQRCIRIVKEFELGGCALCRDQDFSRSFGPRTVIICDQCQKEYHIGCLKDHNMQNIEELPEGDWFCCSDCEHINSTLVNLVARGEENLPIPLLSLIKKKYNDKGLEFGLDIDIKWRLLNWKVGKSEETRQLLSKVAAIFHERFNPIVHTTTGTDYIPTMLFGRNIKGEDFSGMYCMLLTVNEVVVSAGVFRVFGSELAELPLVATVTDFQGQGYFQSLFSCIEGLLGSLKVKRFVLPSADEAESIWTGKFGFTKLEQDEINNYWKYYHMMIFQGSSLLQKQIPQL* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01288 817 PANTHER AUTOIMMUNE REGULATOR 464 813 - -
Phac11g01288 817 Pfam Tify domain binding domain 240 293 IPR032308 -
Phac11g01288 817 Pfam Tify domain binding domain 430 463 IPR032308 -
Phac11g01288 817 Gene3D - 644 814 - -
Phac11g01288 817 SMART PHD_3 547 603 IPR001965 -
Phac11g01288 817 SMART PHD_3 438 502 IPR001965 -
Phac11g01288 817 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 685 794 IPR016181 -
Phac11g01288 817 CDD PHD1_AIRE 464 501 - -
Phac11g01288 817 SUPERFAMILY FYVE/PHD zinc finger 464 506 IPR011011 -
Phac11g01288 817 SUPERFAMILY FYVE/PHD zinc finger 547 600 IPR011011 -
Phac11g01288 817 ProSiteProfiles Zinc finger PHD-type profile. 436 504 IPR019787 -
Phac11g01288 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 523 IPR013083 -
Phac11g01288 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 546 605 IPR013083 -
Phac11g01288 817 Pfam PHD-finger 464 503 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01288 Phac-Chr11 9199569 9206044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01288 394 814 PHD Transcription Factor Family AT2G36720 50.870 6.50e-156 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g01288 TDBD 6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01288 - - aprc:113859749 957.592