Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01287 ATGGCGAACGATACAAATTCAGAACACTTTGTTGAATCGTATGGGGTTCGCATTGGTTTAAAGAGGGAATTTAACTTTGCTATGAAGTCACAGTCACAAATATGTGATTCTCTAGGTCGAACTCGATCGAAAAAGGCCCAAAATTTGGTTCAGGTCTCTACCAATTCCTCTCACAGGCGATACAAAAATGGTGCTGCTCTAAATGCGAAGGAAGTAAAGAGTGATTTGGTGGATGCAAAGAAATTTAGTCAAGTGTGTGACGAAACAACAATGTTTGTTGTTTGTGAAAAGGAGCACAAGAGTGATGAAACTAAAAACCAAGTGCAGAATGAATGTGAAAAGGAACACAAGAATGATGAACTTGAGACTGGGGTTATGCAAATGCAACCTGTTAGTGATAATGATAAGGTTAAGGAGGAAGGTGACACTAATGAGATTGTTCCAATTTTGGGTTGCCAGTTGGAAACCCCAATAAAGGGTATACAATCAACATTGAAAAAGTTAGAAAATGGTGATAGCAATGTTAAGAGTAATGGTGTTGATAAAGAAAGAAATAATGGTTCTATTATTACTATTTCAACTCCGAGAACATCTTCTAAAGGTTTTATGGAAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGGATTCTAGAAGGACTACTTGTGAAATATGTTCGTAGCATCAAGGTGAAATCTATAGGGCTTTTGGGAGTTGTTTCTGGCGTTGGAATTTTGTGTTATTGTGAAGTTTGTAAGAAGGTTGAGGTTGTGTCACCCACAGTTTTTGAGTTGCATGCTGGTAGTACAAACAAGCGTCCTCCGGAGTATATTTTCCTTGAGAATGGAAGTAGTCTTCGTGATGTCATGAATACATTTTTGAATACTCCATTAGACACTTTAGAGGAAGTTGTACAGAAGGTTTTGGGAGGTTTCACAATGAAGACATCTAAATTTTGTGTGAATTGTAGAGGTCTTAATGTCATATCAAAATTATTCTGTAATTCATGTGTGGAGCTATTAAAGGATTGTCAAGCTAGTCTCACCTTAGCAAATGACACCAATAATACCTCTGTACCAGTTGCAGTTCAACCCAGGTCTCCAAGATTAGTTGTACTTCCAAATTCATTAAGTCATGGAATGAAACATAATACATCTCATAAGAGCAAAGGAAGAATAACTAGGAAGGATCTGCGCTTGCATAAGCTGGTCTTTGAGAAAGATGGATTGCCAGATGGAACTGAAGTAGGATATTATATCCATGGAAAGAACTTATTAGCCGGTTACAAAAAGGGATTTGGAATTGTTTGTAGTTGTTGCAATAGTAAGGTCAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCGCGACGAAAGCCCTATGTGAACATATTTACATCTAATGGACAATCACTCCATGATTTGTCTATCTCCTTATCACAAGGTCGCAAATTTTCTACCAATGATAATGACGACCTATGCAGTATATGTAGAGATGGAGGAAATCTTTTGTGTTGTGATGGATGCCCAAGAGCCTTTCACATAGATTGTGTACCTCTCCCATATGTTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAGAATTTGTTTCAAAAGAGCAAATGTATCAAGTTTAATGAAAATGACAAGGCAGCAGGACAAGTTGAGGACATTGATCCCTCAGAGCAGATAAACCAAAGATGCATTCGTATTGTCAAAGAGTTTGAACTTGGTGGATGTGCATTGTGTAGAGACCAAGATTTCAGTAGAAGCTTTGGACCTCGAACAGTAATTATTTGTGATCAGTGTCAAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATGCAGAACATAGAGGAATTACCTGAAGGGGATTGGTTTTGCTGTTCAGATTGTGAGCATATTAATTCTACCTTGGTGAATTTGGTGGCTCGTGGAGAAGAGAATCTTCCAATTCCCCTCTTGAGTTTGATTAAAAAGAAATACAACGACAAAGGTTTAGAATTTGGGCTTGATATTGATATAAAATGGAGGCTTCTGAACTGGAAAGTGGGTAAATCTGAGGAGACTAGACAATTGCTTTCAAAAGTTGCTGCTATTTTTCATGAGCGATTTAATCCAATAGTTCATACTACAACTGGCACGGATTACATTCCAACAATGCTTTTTGGAAGGAACATTAAAGGTGAAGACTTTAGTGGGATGTACTGTATGTTACTCACTGTCAATGAAGTGGTTGTATCTGCTGGAGTATTTCGTGTGTTTGGATCAGAACTGGCAGAACTTCCCTTGGTGGCAACTGTTACTGATTTTCAGGGACAGGGTTACTTCCAATCCCTGTTCTCTTGTATTGAGGGTTTGCTTGGATCATTAAAAGTGAAAAGGTTTGTTCTACCTTCTGCTGATGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAACTGGAACAAGATGAGATCAACAACTACTGGAAATATTATCACATGATGATCTTTCAAGGGTCTTCCTTATTGCAGAAGCAAATTCCTCAACTTTGA 2559 0.3787 MANDTNSEHFVESYGVRIGLKREFNFAMKSQSQICDSLGRTRSKKAQNLVQVSTNSSHRRYKNGAALNAKEVKSDLVDAKKFSQVCDETTMFVVCEKEHKSDETKNQVQNECEKEHKNDELETGVMQMQPVSDNDKVKEEGDTNEIVPILGCQLETPIKGIQSTLKKLENGDSNVKSNGVDKERNNGSIITISTPRTSSKGFMEKKFPSKLKDLLSSGILEGLLVKYVRSIKVKSIGLLGVVSGVGILCYCEVCKKVEVVSPTVFELHAGSTNKRPPEYIFLENGSSLRDVMNTFLNTPLDTLEEVVQKVLGGFTMKTSKFCVNCRGLNVISKLFCNSCVELLKDCQASLTLANDTNNTSVPVAVQPRSPRLVVLPNSLSHGMKHNTSHKSKGRITRKDLRLHKLVFEKDGLPDGTEVGYYIHGKNLLAGYKKGFGIVCSCCNSKVSPSQFEAHAGWASRRKPYVNIFTSNGQSLHDLSISLSQGRKFSTNDNDDLCSICRDGGNLLCCDGCPRAFHIDCVPLPYVPSGTWYCRYCQNLFQKSKCIKFNENDKAAGQVEDIDPSEQINQRCIRIVKEFELGGCALCRDQDFSRSFGPRTVIICDQCQKEYHIGCLKDHNMQNIEELPEGDWFCCSDCEHINSTLVNLVARGEENLPIPLLSLIKKKYNDKGLEFGLDIDIKWRLLNWKVGKSEETRQLLSKVAAIFHERFNPIVHTTTGTDYIPTMLFGRNIKGEDFSGMYCMLLTVNEVVVSAGVFRVFGSELAELPLVATVTDFQGQGYFQSLFSCIEGLLGSLKVKRFVLPSADEAESIWTGKFGFTKLEQDEINNYWKYYHMMIFQGSSLLQKQIPQL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01287 852 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 720 829 IPR016181 -
Phac11g01287 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 558 IPR013083 -
Phac11g01287 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 640 IPR013083 -
Phac11g01287 852 SUPERFAMILY FYVE/PHD zinc finger 485 539 IPR011011 -
Phac11g01287 852 ProSiteProfiles Zinc finger PHD-type profile. 494 539 IPR019787 -
Phac11g01287 852 Gene3D - 679 849 - -
Phac11g01287 852 CDD PHD1_AIRE 496 536 - -
Phac11g01287 852 SMART PHD_3 496 537 IPR001965 -
Phac11g01287 852 SMART PHD_3 582 638 IPR001965 -
Phac11g01287 852 Pfam Tify domain binding domain 240 293 IPR032308 -
Phac11g01287 852 Pfam Tify domain binding domain 430 478 IPR032308 -
Phac11g01287 852 ProSitePatterns Zinc finger PHD-type signature. 497 536 IPR019786 -
Phac11g01287 852 SUPERFAMILY FYVE/PHD zinc finger 582 635 IPR011011 -
Phac11g01287 852 PANTHER AUTOIMMUNE REGULATOR 50 848 - -
Phac11g01287 852 Pfam PHD-finger 497 538 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01287 Phac-Chr11 9199569 9206044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01287 394 849 PHD Transcription Factor Family AT2G36720 55.217 2.82e-179 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g01287 TDBD 6.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01287 - - aprc:113859749 1026.16