Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01280 ATGATGCCAAAGGCTACATCTACCTCCACTAACGATTTTCAAGCACTTCACATGTTTCCTGTGAATGAATATTTGGTTTCATCGTCTCTTGAACTAAGCTCTTCCTCAGCTTCACACTCTTCTACCTCCCTCCTCTGCTATCTTTCTCTTCTGAAGGACAAGCTAGGTCAGCTGCAGAACCTGGTTGATGTTTTTGTGTCCCCTCAACATAACCTACCCGAGTCAACTCCCATGGCAATCTCCACCATGAACTCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGACTCTCGGTTCCTCTTCAGGTACTAGTAATATTGCTGATGAATTGCACCGAAACCAGAATCAGCAACAACTTGATCATGATAGATTGTTATCATTATCACCTCATCATCCATCAAACTTTGGAAACAACAATAGGGGTATGGTTAGTATGAGTAGCATTAGCATGAGCTCAGATATGATTAAAGGGCAAAGTGATTTCTTATCAAGTATTGAAGGAGGGGCACTGGATTGGTTTGCTGAAAGCTATAATAATAACAATAGTGGAGATTGTAACATTAAGGATGAAGAAGCCGACATCAACGTGATGGTAGAGAGTGATATAATCGAATTGGACGCTGCGGATTTGTTGGCAAAGTACTCGTATTTTTGCCAAGTGTGTGGGAAAGGATTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAACTGCAGCCTTGAGCAACCCAATGAAAAGCAGGGATAGTTTATTGGGTGAGGGAAGTTCCACCAAGAAATTTTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAAAAACATGCCAAGTTCCAGCCCTTGAAGTCAATGATTTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCATAAACAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACAACGTTTTCTAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTGGGGCACACCCCAGCTCTTCATGGCTTTTCAAGATATGTTCGATGA 1140 0.4395 MMPKATSTSTNDFQALHMFPVNEYLVSSSLELSSSSASHSSTSLLCYLSLLKDKLGQLQNLVDVFVSPQHNLPESTPMAISTMNSTLQEIIVAATSMRFTCQQMTLGSSSGTSNIADELHRNQNQQQLDHDRLLSLSPHHPSNFGNNNRGMVSMSSISMSSDMIKGQSDFLSSIEGGALDWFAESYNNNNSGDCNIKDEEADINVMVESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTTAALSNPMKSRDSLLGEGSSTKKFSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNHKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPALHGFSRYVR* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01280 379 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 371 IPR044300 GO:0010044|GO:0010447
Phac11g01280 379 FunFam Zinc finger protein 574 224 248 - -
Phac11g01280 379 SUPERFAMILY beta-beta-alpha zinc fingers 223 251 IPR036236 -
Phac11g01280 379 SMART c2h2final6 315 337 IPR013087 -
Phac11g01280 379 SMART c2h2final6 225 247 IPR013087 -
Phac11g01280 379 SMART c2h2final6 277 310 IPR013087 -
Phac11g01280 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Phac11g01280 379 Gene3D Classic Zinc Finger 221 249 - -
Phac11g01280 379 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Phac11g01280 379 Gene3D Classic Zinc Finger 313 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01280 Phac-Chr11 9161919 9163777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01280 41 376 C2H2 Transcription Factor Family AT5G22890 49.280 1.53e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g01280 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01280 - - vum:124833786 642.884