Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01278 ATGGAGATGGAAGGGTTATATTCTAATTCTAATTCCAATTCCAATTCCAGTTCTACCCAGAGCAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGCTAGCACCGCCGCCACTGGAGTCACCACCACTAGTTGCTCCAGTCCTAATTCTGGCGGCTCCTCCACCACCACTTACGAGAGCGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAACCTCACCATCATCAACCTCGTCATCACAAGCAACAAGTTGAAGATCATGGTCTTGGAGATTGTAACGGTGTCAAGACAGAAAAGGGTAACGGTAACACCACCAACACCGCCGCAACAACCGCAGTTAACACCAAAGTTGGGTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCTCTTGGTGGACACCGGGCGAGTCACAAAAAGCCCAAACTCGTGGGTGAAGAGAAAAAAACACCACCCTCTCAATTGCAGCACATGTTTGTTACCAAGTATGATCGGTTCGAAGAGGATAACGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTCATGGCAACAACAGCAAGGGTAAGATTCATGAATGTTCCATTTGTGGTTCTGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCAACAAACACCAACACTGTTGACACAAGTTCTAACACCGTCACCGCTGTCGCCACCACTGTTTCGCCGCCGCGTAACATCTTGCAATTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCCAAGTTTCAATTTCCCGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 915 0.4809 MEMEGLYSNSNSNSNSSSTQSNIAKGKRTKRMRLLSPSGVVVASTAATGVTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGEPHHHQPRHHKQQVEDHGLGDCNGVKTEKGNGNTTNTAATTAVNTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLVGEEKKTPPSQLQHMFVTKYDRFEEDNVKSGPPISLQLGHGNNSKGKIHECSICGSEFSSGQALGGHMRRHRASTNTNTVDTSSNTVTAVATTVSPPRNILQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01278 304 MobiDBLite consensus disorder prediction 49 70 - -
Phac11g01278 304 MobiDBLite consensus disorder prediction 87 122 - -
Phac11g01278 304 SMART c2h2final6 138 160 IPR013087 -
Phac11g01278 304 SMART c2h2final6 214 236 IPR013087 -
Phac11g01278 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Phac11g01278 304 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Phac11g01278 304 Gene3D Classic Zinc Finger 135 236 - -
Phac11g01278 304 PANTHER ZINC FINGER PROTEIN ZAT5 62 286 - -
Phac11g01278 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Phac11g01278 304 SUPERFAMILY beta-beta-alpha zinc fingers 138 236 IPR036236 -
Phac11g01278 304 MobiDBLite consensus disorder prediction 94 109 - -
Phac11g01278 304 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Phac11g01278 304 MobiDBLite consensus disorder prediction 1 25 - -
Phac11g01278 304 MobiDBLite consensus disorder prediction 1 30 - -
Phac11g01278 304 Pfam C2H2-type zinc finger 214 238 - -
Phac11g01278 304 Pfam C2H2-type zinc finger 138 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01278 Phac-Chr11 9145845 9147412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01278 18 304 C2H2 Transcription Factor Family AT2G28200 39.557 9.22e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g01278 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01278 - - gmx:100785286 375.17