Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01276 ATGGACACAACCCATCTTCATGAAGAAACTGTACTGCACATTGATGACTTTGAGCTACACGACTTTGTTGAAGATCCCAACTTAGATCAGTTGATCAATTTGATTCGTTCGGAGAAGAAAGATGCCATTTGTGACTTCAATTCTGAGCTTATCAATGAAGCATTCATTGATAACTCTTTCTTGGCACCCCCTGCAATCCCATCTGATCACTGCAATAGAAATGCTGTCAATGTCTATGATTCAAACTCTACACCTAACTCCTTCGCTTATTTTGATGGGGAAGCCAAAGGAAGAGGGGGAGGAGAAGAGAAAGATGACATGGAGCACTCCTCTGCAACAACACCTACTAAGAGTCTTGTTCCTAAGTCAAAACCAAAAACTGACAGGTCCAAAACTTTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTCATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTGTCATATATGCACGAGCTTCAAGCACAAGCCAATATGCTTAAAGATGAGGTTGAAGGACTTGAAACATCCTTACTGGTGTCTAAAAATTATGAAGGATCAAATGAAAATCTCAAGAATGTTGAATTTAACAGCCTTTCAATATGCAAGAAGATAATCCAGATGGACATGTTTCAAGTAGATGCAAAAGGGTTTTATGTGAAAATAGTTTCCAACAAAGGAGAAGGAGTGGCTGCCTCATTGTACAAATCTATAGAGTCTCTGAGAGGCTTCCATGTTCAGAATTCAAACTTATCCACAGTTTGTAACACTTTTCAACTTACATTTTCATTGAATGTGAAAAGCTCTGAGCCAGAAATGAACCTGCACAACTTGAAAATTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCTACCATTTTTAG 939 0.3898 MDTTHLHEETVLHIDDFELHDFVEDPNLDQLINLIRSEKKDAICDFNSELINEAFIDNSFLAPPAIPSDHCNRNAVNVYDSNSTPNSFAYFDGEAKGRGGGEEKDDMEHSSATTPTKSLVPKSKPKTDRSKTLISERRRRDRMKEKLHALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKDEVEGLETSLLVSKNYEGSNENLKNVEFNSLSICKKIIQMDMFQVDAKGFYVKIVSNKGEGVAASLYKSIESLRGFHVQNSNLSTVCNTFQLTFSLNVKSSEPEMNLHNLKIWVSEAFVKQGFEFYHF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01276 312 MobiDBLite consensus disorder prediction 122 141 - -
Phac11g01276 312 Gene3D - 119 193 IPR036638 GO:0046983
Phac11g01276 312 MobiDBLite consensus disorder prediction 96 111 - -
Phac11g01276 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Phac11g01276 312 Coils Coil 173 193 - -
Phac11g01276 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Phac11g01276 312 SMART finulus 133 182 IPR011598 GO:0046983
Phac11g01276 312 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Phac11g01276 312 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
Phac11g01276 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 54 302 - -
Phac11g01276 312 MobiDBLite consensus disorder prediction 90 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01276 Phac-Chr11 9108197 9109987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01276 13 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.515 1.20e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g01276 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01276 K26214 - gmx:100778649 398.667