Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01275 ATGGACACAACCCATCTTCATGAAGAAACTGTACTGCACATTGATGACTTTGAGCTACACGACTTTGTTGAAGATCCCAACTTAGATCAGTTGATCAATTTGATTCGTTCGGAGAAGAAAGATGCCATTTGTGACTTCAATTCTGAGCTTATCAATGAAGCATTCATTGATAACTCTTTCTTGGCACCCCCTGCAATCCCATCTGATCACTGCAATAGAAATGCTGTCAATGTCTATGATTCAAACTCTACACCTAACTCCTTCGCTTATTTTGATGGGGAAGCCAAAGGAAGAGGGGGAGGAGAAGAGAAAGATGACATGGAGCACTCCTCTGCAACAACACCTACTAAGAGTCTTGTTCCTAAGTCAAAACCAAAAACTGACAGGTCCAAAACTTTGATTTCTGAGAGGAGGAGAAGAGACAGAATGAAGGAAAAGCTTCATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTGTCATATATGCACGAGCTTCAAGCACAAGCCAATATGCTTAAAGATGAGGTTGAAGGACTTGAAACATCCTTACTGGTGTCTAAAAATTATGAAGGATCAAATGAAAATCTCAAGAATGTTGAATTTAACAGCCTTTCAATATGCAAGAAGATAATCCAGGTGTTTTGA 678 0.3968 MDTTHLHEETVLHIDDFELHDFVEDPNLDQLINLIRSEKKDAICDFNSELINEAFIDNSFLAPPAIPSDHCNRNAVNVYDSNSTPNSFAYFDGEAKGRGGGEEKDDMEHSSATTPTKSLVPKSKPKTDRSKTLISERRRRDRMKEKLHALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKDEVEGLETSLLVSKNYEGSNENLKNVEFNSLSICKKIIQVF* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01275 225 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
Phac11g01275 225 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 53 197 - -
Phac11g01275 225 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Phac11g01275 225 MobiDBLite consensus disorder prediction 90 133 - -
Phac11g01275 225 Gene3D - 118 193 IPR036638 GO:0046983
Phac11g01275 225 MobiDBLite consensus disorder prediction 96 111 - -
Phac11g01275 225 Coils Coil 173 193 - -
Phac11g01275 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Phac11g01275 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Phac11g01275 225 SMART finulus 133 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01275 Phac-Chr11 9108197 9109987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01275 13 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 46.667 3.54e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g01275 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01275 K26214 - gmx:100778649 269.24