Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01273 ATGGTTCATTCATTCAAGCTCGCATTGTGTTTTCGATCCTCTTTTCCTATTTCCTTCTATTTCTCCCCAACTGTTAGGGTTTCCTCTCTCTTCTCTTTCCCTCTGTCTCTCCCCTCCGTTTCTCTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCTCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAGAATTCCCAGTCCAAACCCCAAACACCCAAACTTTCATCATCCCCCAAGAAAAGAAAATCCCCACACTCCACTTCCTCAGAAAACCCTAGCAACAACAAATCCCCCAAGCTGCCTTCTCCGCCCATAACCGTTGAACCGGAGCAAGCTGTTAAACCGGAGCAAGCTGTTAAACCGGAACAAGCTGTTGAACCGGAACAAGTTGTTAAACCAGAAGAAGCTCTTAAACCAGAAGAAGCCGTTAAACCGGAACAACGGAAGGTCCGCCACCTGTCGTCGTCTAATTCTTCGAACGGGAAGACCGTGGAGCTGATGAAGCAAGTTCCGCAGCTAAAGCAGAAACCCTCGAGTTTCGACCCCGCTTCGGTGACTGCATGGGAGAAGGGACAGCCAGTGCCGTTTCTCTTTCTCGCCTTGGCATTTGATATGATTTCTCAGGAAAGTGGAAGAATTGTTATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTCGTCACGCCGGAGGATCTTGTTCCCATCGTTTACCTCTCCGCGAACCGGATTGCGCCTGCTCATGAAGGGTTGGAGTTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCCTATGGAAGGAACGAGTCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCATTGACCATTAGGAAGGTTTTCAACACTTTTCACCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAACCATATCAAGGCACTTCTTGTTGCTGCAACTGAGTGTGAACCTCAATATCTAATTCGTTTGCTTCAGGCGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCATTAGGCCAAGCTGCAGCGTACACTGAAGAACACTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGATGCTTCCAAAGAATTGCAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAGCAAAAAGTGTGACTGAAATTCTAAACAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTAAAGAAACCGAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGCGCAACACAGAAGCTTCTTTCTTTCCAGACTCTTACTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGCGTATTTGCTTTTGATTTGTTGTATCTAAATGGGCAAGAACTTCTTCAGGAAAACCTCAGAGTCCGTAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAAAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATCATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGATTTGGTACCTATTGCTGCTTTCCACGGACGTGGAAAACGTACAGGAGTTTATGGCGCCTTCCTCCTGGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTCGCAGAATCTGATCTTGTAGAACGTTCTTCCAGTCTTCGTTCTAATGTGATTTCCAAGCCAAAGTCATACTATAGATTTGGAGAAACAATCAATCCTGATGTTTGGTTTGAAGCCAGTGAGTACTTCAATGGAAGACATGGACGAAATTTCATACTGTTGGGAATACTATTATGGTCTGATGCCACTCGATCGTGGCTGAATGATCTCCCAATGTGGTCGAACATTGCTTTTGGCATTCCTTTCTAG 2337 0.4429 MVHSFKLALCFRSSFPISFYFSPTVRVSSLFSFPLSLPSVSLRAMSKPPSAFDALMSGARAAAKKNSQSKPQTPKLSSSPKKRKSPHSTSSENPSNNKSPKLPSPPITVEPEQAVKPEQAVKPEQAVEPEQVVKPEEALKPEEAVKPEQRKVRHLSSSNSSNGKTVELMKQVPQLKQKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLVTPEDLVPIVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNESWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFHLIAKESGKDSQEKKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAEQTLLAALGQAAAYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWMLPKNCKFTPGVPIRPMLSKAAKSVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKPSVSSFILDCEIVAYDRATQKLLSFQTLTTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFAESDLVERSSSLRSNVISKPKSYYRFGETINPDVWFEASEYFNGRHGRNFILLGILLWSDATRSWLNDLPMWSNIAFGIPF* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01273 778 ProSiteProfiles ATP-dependent DNA ligase family profile. 545 681 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac11g01273 778 ProSitePatterns ATP-dependent DNA ligase signature 2. 617 643 IPR016059 GO:0003909
Phac11g01273 778 SUPERFAMILY Nucleic acid-binding proteins 651 735 IPR012340 -
Phac11g01273 778 Gene3D - 173 441 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac11g01273 778 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 71 736 - -
Phac11g01273 778 MobiDBLite consensus disorder prediction 62 79 - -
Phac11g01273 778 Gene3D - 449 648 - -
Phac11g01273 778 NCBIfam ATP-dependent DNA ligase 255 731 IPR000977 GO:0003910|GO:0005524|GO:0071897
Phac11g01273 778 Pfam ATP dependent DNA ligase domain 439 643 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac11g01273 778 FunFam DNA ligase 439 645 - -
Phac11g01273 778 Gene3D - 652 742 IPR012340 -
Phac11g01273 778 Gene3D DNA ligase/mRNA capping enzyme 468 593 - -
Phac11g01273 778 FunFam DNA ligase 174 441 - -
Phac11g01273 778 Pfam ATP dependent DNA ligase C terminal region 668 736 IPR012309 GO:0003910|GO:0006281|GO:0006310
Phac11g01273 778 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 179 430 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac11g01273 778 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 463 471 IPR016059 GO:0003909
Phac11g01273 778 CDD Adenylation_DNA_ligase_I_Euk 428 646 - -
Phac11g01273 778 MobiDBLite consensus disorder prediction 59 164 - -
Phac11g01273 778 MobiDBLite consensus disorder prediction 129 153 - -
Phac11g01273 778 Pfam DNA ligase N terminus 197 372 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac11g01273 778 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 431 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01273 Phac-Chr11 9077220 9086822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01273 28 739 Core DNA Replication Machinery Family AT1G08130 63.510 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01273 K10747 - gmx:100783155 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01273 11 9077220 9086822 Phac11g01273 11 9077220 9086822 ECH