Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01272 ATGGTTCATTCATTCAAGCTCGCATTGTGTTTTCGATCCTCTTTTCCTATTTCCTTCTATTTCTCCCCAACTGTTAGGGTTTCCTCTCTCTTCTCTTTCCCTCTGTCTCTCCCCTCCGTTTCTCTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCTCTCATGTCCGGCGCCCGCGCCGCCGCCAAGAAGAATTCCCAGTCCAAACCCCAAACACCCAAACTTTCATCATCCCCCAAGAAAAGAAAATCCCCACACTCCACTTCCTCAGAAAACCCTAGCAACAACAAATCCCCCAAGCTGCCTTCTCCGCCCATAACCGTTGAACCGGAGCAAGCTGTTAAACCGGAGCAAGCTGTTAAACCGGAACAAGCTGTTGAACCGGAACAAGTTGTTAAACCAGAAGAAGCTCTTAAACCAGAAGAAGCCGTTAAACCGGAACAACGGAAGGTCCGCCACCTGTCGTCGTCTAATTCTTCGAACGGGAAGACCGTGGAGCTGATGAAGCAAGTTCCGCAGCTAAAGCAGAAACCCTCGAGTTTCGACCCCGCTTCGGTGACTGCATGGGAGAAGGGACAGCCAGTGCCGTTTCTCTTTCTCGCCTTGGCATTTGATATGATTTCTCAGGAAAGTGGAAGAATTGTTATCACTGACATTGTTTGCAATATGCTGCGGACTGTGATGCTCGTCACGCCGGAGGATCTTGTTCCCATCGTTTACCTCTCCGCGAACCGGATTGCGCCTGCTCATGAAGGGTTGGAGTTGGGAATCGGCGAGTCGATCATTTCCAAGGCGCTCGCGGAGGCCTATGGAAGGAACGAGTCGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCGTCTCAACCTATGATGTGGAAGCCTGAAGCATTGACCATTAGGAAGGTTTTCAACACTTTTCACCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGAGAAAAAAAAGAACCATATCAAGGCACTTCTTGTTGCTGCAACTGAGTGTGAACCTCAATATCTAATTCGTTTGCTTCAGGCGAAGTTGCGAATTGGTTATGCAGAGCAAACTCTATTGGCTGCATTAGGCCAAGCTGCAGCGTACACTGAAGAACACTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGACAAGGCTTCGGATATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTATGGATGCTTCCAAAGAATTGCAAATTTACTCCTGGTGTTCCAATTAGACCTATGCTGTCAAAGGCAGCAAAAAGTGTGACTGAAATTCTAAACAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATCTGGAGAATGGTTCAGTTGAGATTTACAGTAGACAAGCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCAGTTTCAAGGTTAAAGAAACCGAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGACCGCGCAACACAGAAGCTTCTTTCTTTCCAGACTCTTACTACTCGAGCTCGCAAGAAAGTAGAAATTGAAGATATAAAGGTTAATGTTTGCGTATTTGCTTTTGATTTGTTGTATCTAAATGGGCAAGAACTTCTTCAGGAAAACCTCAGAGTCCGTAGAGAGCATCTTTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAGCATTAACTTCAAATGATGTTGAGGAGATACAAAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATCATTAAAACATTAAATGAGGATGCTACATATGAACCTGCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCTGTAGATTTGGTACCTATTGCTGCTTTCCACGGACGTGGAAAACGTACAGGAGTTTATGGCGCCTTCCTCCTGGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTCGCAGAATCTGATCTTGTAGAACGTTCTTCCAGTCTTCGTTCTAATGTGATTTCCAAGCCAAAGTCATACTATAGATTTGGAGAAACAATCAATCCTGATGTTTGGTTTGAAGCCAGTGAGGTGTGGGAAGTGAGAGCGGCAGACCTGACCATTAGCCCTGTCCACCGTGCTGCAGCGGGCATAGTTGATCCGAACAAGGGCATATCTCTTCGATTTCCACGACTAGTTCGACTCCGGCATGACAAAGCTCCTGAACAGGCCACAACAGCTGAGCAGGTTGCTGAGTTGTATAAAGCTCAAAAACACAATCAAGCGAACAAACAAGATGATGAAGATGAAGAAGATTATTGA 2442 0.448 MVHSFKLALCFRSSFPISFYFSPTVRVSSLFSFPLSLPSVSLRAMSKPPSAFDALMSGARAAAKKNSQSKPQTPKLSSSPKKRKSPHSTSSENPSNNKSPKLPSPPITVEPEQAVKPEQAVKPEQAVEPEQVVKPEEALKPEEAVKPEQRKVRHLSSSNSSNGKTVELMKQVPQLKQKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNMLRTVMLVTPEDLVPIVYLSANRIAPAHEGLELGIGESIISKALAEAYGRNESWIKTQYQKKGDLGLVAKESRSSQPMMWKPEALTIRKVFNTFHLIAKESGKDSQEKKKNHIKALLVAATECEPQYLIRLLQAKLRIGYAEQTLLAALGQAAAYTEEHSKPPPEIQSPLDKASDIVKQVYSVLPDYDKIISALLTEGLWMLPKNCKFTPGVPIRPMLSKAAKSVTEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRQAERNTEKFPDVAAAVSRLKKPSVSSFILDCEIVAYDRATQKLLSFQTLTTRARKKVEIEDIKVNVCVFAFDLLYLNGQELLQENLRVRREHLYASFEEESGFLQFATALTSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFAESDLVERSSSLRSNVISKPKSYYRFGETINPDVWFEASEVWEVRAADLTISPVHRAAAGIVDPNKGISLRFPRLVRLRHDKAPEQATTAEQVAELYKAQKHNQANKQDDEDEEDY* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01272 813 ProSiteProfiles ATP-dependent DNA ligase family profile. 545 681 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac11g01272 813 ProSitePatterns ATP-dependent DNA ligase signature 2. 617 643 IPR016059 GO:0003909
Phac11g01272 813 CDD OBF_DNA_ligase_I 651 796 - -
Phac11g01272 813 Pfam ATP dependent DNA ligase C terminal region 668 779 IPR012309 GO:0003910|GO:0006281|GO:0006310
Phac11g01272 813 FunFam DNA ligase 439 645 - -
Phac11g01272 813 MobiDBLite consensus disorder prediction 62 79 - -
Phac11g01272 813 FunFam DNA ligase 648 807 - -
Phac11g01272 813 Gene3D DNA ligase/mRNA capping enzyme 468 593 - -
Phac11g01272 813 MobiDBLite consensus disorder prediction 794 813 - -
Phac11g01272 813 FunFam DNA ligase 174 441 - -
Phac11g01272 813 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 431 649 - -
Phac11g01272 813 Pfam DNA ligase N terminus 197 372 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac11g01272 813 Pfam ATP dependent DNA ligase domain 439 643 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Phac11g01272 813 Gene3D - 648 811 IPR012340 -
Phac11g01272 813 Gene3D - 173 441 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Phac11g01272 813 SUPERFAMILY Nucleic acid-binding proteins 651 797 IPR012340 -
Phac11g01272 813 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 463 471 IPR016059 GO:0003909
Phac11g01272 813 CDD Adenylation_DNA_ligase_I_Euk 428 646 - -
Phac11g01272 813 MobiDBLite consensus disorder prediction 129 153 - -
Phac11g01272 813 MobiDBLite consensus disorder prediction 59 164 - -
Phac11g01272 813 NCBIfam ATP-dependent DNA ligase 255 795 IPR000977 GO:0003910|GO:0005524|GO:0071897
Phac11g01272 813 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 71 811 - -
Phac11g01272 813 Gene3D - 449 647 - -
Phac11g01272 813 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 179 430 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01272 Phac-Chr11 9077220 9086988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01272 28 811 Core DNA Replication Machinery Family AT1G08130 64.177 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01272 K10747 - gmx:100783155 1233.39