Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01217 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCAACATTTGCAGGAGTTCCCTAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAACGGAAACATGCTCGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTGCTTCGAATCCTTTATCTACTCCCAGAAACCCGTTGGAGTGTCAAGAGTTGATGATGGCTCAGTATGGTTCCACGTTTCCTCATTCATCATCCCCTAAGGACCAACAATGTGGACCACGCCACTTGGGTTCTAATTGGATGGTGAATTATAACGAAAGCAACACCAACACCAACAACAACAACACCTTCTTCTCTTCTGACCTTAATAACAATGCTTCTGGTGAAATGGCCAATAGAGAAATTCAGAAGCAGTTAGGTGAAATGCATTACCCCCCTTCTTCGTCTTCTTCACCTCCTCTTTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAGCGAGTTACGTTTTGGGGGGGCTAATATATGGGCAAATAGTAGCGGAATGGGTTTCAAAAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTGTCACTGTCACTTTCATCAAACTCACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACACAATATTCAAAGTCAGTAAAGTGCTCCATGAAGCTGAACGTGCTTTCAAACAACACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATATGGTTCAAAGTCTGCGAGAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTATTTCAGCAGCTGCAGCTGCTGGTGATGCTCTTAATGTTGATGAAAGTGAAGGTGCTGCAAAAGGTGGTGGCAATTTGGGTGTTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGATGAGGTTACTAGGAGATTTAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCATTCGAGACTGTAGCGGGTCTTAGTTCGGCTACTCCGTATGTCTCCTTGGCTCTTAGGTCAGTATCCAAACACTTCAAATGTTTAAAAAATGCTATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCATTGCCAACCACAAGTAATGGTGGTAAATTTGACAATAATATGGCAAGGCTAAGGTGCATAGATCAAAGTTTTCAGAAACACAAATCTCTGGGGGCAAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGATCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAACCCCGCCAAGCCTCTAATAAAACTGACCAGGTAGCTTCTGCATCTGAAGGTAGCAACCAGCCCAAATCAGATCACCAATCTGTGAGCAGGTTTGGCACGCAGGCATCATCGCATGCAATCCATGACAATCAATTTCAGTGCTTGGAAATGGGGTCATCATCCTCAGCAGGAAATGAGGAACACATTGGAATGAATGAAGTCCAATGGAGTCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTACAACACCAAATATGGATGGGACAGTGATGGGGTTTATGCCGTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTACAACAGCAACAACTGCAGCAAGAGGAGGATCTTAGGCGTCAGTTTGGTGGGCACATGATCCATGACTTTGTGGGCTAG 2241 0.4471 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTASNPLSTPRNPLECQELMMAQYGSTFPHSSSPKDQQCGPRHLGSNWMVNYNESNTNTNNNNTFFSSDLNNNASGEMANREIQKQLGEMHYPPSSSSSPPLYHNALQDMAYGVWGGNHAEPVLHYQANSELRFGGANIWANSSGMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSVKCSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSARGGGCDVPEWVSRDVSAASISAAAAAGDALNVDESEGAAKGGGNLGVSSSVLYSSNENDNTNSADGGATSSFCLSSRPECQKNKAKLLYMQDEVTRRFKQYHQQMQMVVQSFETVAGLSSATPYVSLALRSVSKHFKCLKNAISDQLKLTCEVLGEDFSLPTTSNGGKFDNNMARLRCIDQSFQKHKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEPRQASNKTDQVASASEGSNQPKSDHQSVSRFGTQASSHAIHDNQFQCLEMGSSSSAGNEEHIGMNEVQWSQEKRSKLECQIATTPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEDLRRQFGGHMIHDFVG* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01217 746 Pfam Associated with HOX 294 464 IPR006563 -
Phac11g01217 746 CDD homeodomain 523 584 IPR001356 GO:0003677
Phac11g01217 746 SMART HOX_1 523 587 IPR001356 GO:0003677
Phac11g01217 746 Gene3D - 526 588 - -
Phac11g01217 746 MobiDBLite consensus disorder prediction 592 633 - -
Phac11g01217 746 ProSiteProfiles 'Homeobox' domain profile. 520 583 IPR001356 GO:0003677
Phac11g01217 746 FunFam BEL1-like homeodomain protein 9 526 588 - -
Phac11g01217 746 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 611 - -
Phac11g01217 746 MobiDBLite consensus disorder prediction 222 259 - -
Phac11g01217 746 Pfam Homeobox KN domain 540 579 IPR008422 GO:0003677|GO:0006355
Phac11g01217 746 SUPERFAMILY Homeodomain-like 525 589 IPR009057 -
Phac11g01217 746 SMART prehox3 289 465 IPR006563 -
Phac11g01217 746 MobiDBLite consensus disorder prediction 597 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01217 Phac-Chr11 8419514 8427003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01217 378 717 Homeobox Transcription Factor Family AT4G34610 41.228 5.82e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phac11g01217 POX 3.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01217 - - vum:124831694 1331.62