Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01187 ATGAAGGACTGGTTGTTTTTTGACAAGAGTTTTAATGGTTTGTCGGACGATATTCTTGATGATGTCATGGACATCGAGCTTTTCGATTTGCCCCTTGAAGATGTGGAAACTGACGATGGTATGGAACAAGATTGGGATGCTCAGTTCAAATTCATTGAAGAGCCTTCACTGGGAATTTTTCCTGTACAATCGTCTCAGCTCTGTGCTCGTACTCAAAATGAGATTGTGAAAGTCGAAACGGGTTTCTCTGCTTCTCCAGCGAAGACGGCGGGACCGGGACCTACATATAGCAAAAATATTCCTATTCAAAAAGTGTCTTTCAAAGGAAAAGATTTGCACCAATTCCAAACAAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGCAGTTCTCCCTCAGTTGAGAACTCTAACTTTGAGTTACCTGTTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGGCTCTCTCAAACATCACCCTGCTATACTCCATTCCTTTCATCTGCACTTCACCAGCTTTTCAAAAATTTCGAAGAACAGCTGTCTCAAAATCAGATTTAGAAACACAACCACTTGGGAAATTGTCAAGCATGGTAAAAAAGCAGAGGAAAAAGAATGTTCCTCTGCTAGCTAACAAAGAGATGAAGAGATCCTCATCAGAGGAATCAGTTGCAGTCAGAAAATGCTTGCATTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTATGCAATGCTTGTGGAGTTCGGTACCGGTCTGGCCGGCTCTTTGCTGAATACCGGCCTGCAGCCAGCCCCACTTTTGTAGGATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCACCCAGGTGA 888 0.4392 MKDWLFFDKSFNGLSDDILDDVMDIELFDLPLEDVETDDGMEQDWDAQFKFIEEPSLGIFPVQSSQLCARTQNEIVKVETGFSASPAKTAGPGPTYSKNIPIQKVSFKGKDLHQFQTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRSKRRALSNITLLYSIPFICTSPAFQKFRRTAVSKSDLETQPLGKLSSMVKKQRKKNVPLLANKEMKRSSSEESVAVRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVGSLHSNSHKKVLEIRNRAPR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01187 295 PANTHER GATA TRANSCRIPTION FACTOR 42 292 - -
Phac11g01187 295 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
Phac11g01187 295 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Phac11g01187 295 Gene3D - 223 272 IPR013088 GO:0006355|GO:0008270
Phac11g01187 295 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Phac11g01187 295 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Phac11g01187 295 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
Phac11g01187 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 283 - -
Phac11g01187 295 FunFam GATA transcription factor 216 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01187 Phac-Chr11 8161662 8170454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01187 14 292 C2C2-Gata Transcription Factor Family AT1G08000 37.710 7.12e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac11g01187 GATA 5.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01187 - - gmx:100781869 410.223