Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01168 ATGAGTGCAGAGGAAAAGCCTGTGAATGAGGAACATGATGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGAATAACTGAAGAAACCTCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTGGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAATTCTAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAACCATAAGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGAAAAGGCAAATACTGCAGCTCCAGAACTTTCCTCTTCAGGCATTGTAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCACTAGATGAAATTAGACAATCAAACAACGAATCTTCTCATGGTGGAGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCCCGAGTAAAGGAAAGAGATGAATTGGTAGACACTTCAACAAATGATACTGAAAATCAAGATGCTAACGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACATGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAGTAGGTCTCCGCTGGAAGATGCAACCGGATACAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTTGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTAAAAAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCGCATATTTTTTACTCCATGGTTCGTGTGCAAGCCGTTTTGTCTATCCTTCTGGCTACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAAGCTTTATCAGAGCAGCGACAAGGCCCTCAATTGATCCCACAAACAGGACAAAATCCACGATCTTCAAACACTCCTCATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAAGCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1554 0.4286 MSAEEKPVNEEHDAGSCRRTVSLPVQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPNSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSTIRSLLPKLSFRYRTPAADVEKANTAAPELSSSGIVEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVKERDELVDTSTNDTENQDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGASRSPLEDATGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSMVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQALSEQRQGPQLIPQTGQNPRSSNTPHSDSGSGPSNHSQAVVQNEQNSNQS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01168 517 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Phac11g01168 517 MobiDBLite consensus disorder prediction 79 111 - -
Phac11g01168 517 MobiDBLite consensus disorder prediction 1 111 - -
Phac11g01168 517 MobiDBLite consensus disorder prediction 1 17 - -
Phac11g01168 517 MobiDBLite consensus disorder prediction 471 517 - -
Phac11g01168 517 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Phac11g01168 517 MobiDBLite consensus disorder prediction 53 71 - -
Phac11g01168 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 320 IPR013083 -
Phac11g01168 517 CDD RING_CH-C4HC3_MARCH 265 313 - -
Phac11g01168 517 MobiDBLite consensus disorder prediction 172 188 - -
Phac11g01168 517 MobiDBLite consensus disorder prediction 171 212 - -
Phac11g01168 517 SMART ringv_2 264 313 IPR011016 GO:0008270
Phac11g01168 517 PANTHER OS02G0165000 PROTEIN 23 477 - -
Phac11g01168 517 SUPERFAMILY RING/U-box 261 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01168 Phac-Chr11 7928328 7934916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01168 262 368 C3H Transcription Factor Family AT2G37950 35.965 2.90e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01168 - - gmx:100815566 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02021 5 40149706 40154227 Phac11g01168 11 7928328 7934916 PCT