Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01167 ATGGCGGAACCTGTCACGAACATCCAACTCTCTCCCTCTAAAACCCTAGGTTCAATCAACGGTCATGATTCTATTGTGGAACCGAATCAAACGCTTTCACAAGATGCTCAACTCAATCAAGAAAACGACGTCGTCGTTTCGACCGGGAAACGGAATAGGGAAGAAAACGACGGCGAGGAAAGTTCGCTTCATCCCATGTGGAAGACCAGCCTCTGCTCCTTCTACAGGAGCCACAACAACTCATGTAACCACGGCGACACGTGCCGCTACGCGCATGGCGAGGAGGAACTCCGCCCTCGCCCCGATAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTGAAGACCGAGACGGGCGAAAAGTACGCCGTATCGGAGGACGTGATGATGACGGAGGCTGTTGTCGATGATGACGATTACGGTTCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAGTGGAGTTCCGAGAATTTGAGGAATTTTCTCAACGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAGGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTGAAAAGAAAAGTAACCCCAGTGTTGCTTCCCATCAAGAATTGGATGAGGGGGTTGATGTTCCTTCGAGTGGAGCTTTGGATGCTGAAACAAATAATGATAAGTTGGCTGTTGATGGTTCTGTGTCTAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATTCCCTATGCTGATCAATTGGAGCAGAAAAAAACCTCTCTCATGCAGATTCTCAAAAAGCTTACTAGAAATGCTCGCAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGACTGGATTCTCAAGTCCAGGGAAATAGGTGGTCTTCCGTGCAAATTAGAAGGTATTATTGAATCTCCAATTGTAAATGGATACCGTAACAAGTGCGAATTCTCTGTTGGATATTCTCTGGAAGGCAATGTGACTGTAGGTTTCATGATGGGAAACTTCAGGGAAGGTGTTACAGCAGTTGAGGAACCAGTCGAATGCCCAAATGTTTCAAATATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGCACAGTGACTTACCAGTTTGGAACCGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAGTGGGAATACTGATCCTGCTGTAACTTTTGGTGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGCTGGTGGAGCTACTTCGCAGTGTCCAACATTACCCCTCACGGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCCGCTGATGCACCACTGCATTTGCTTACACTTCCTAAAGCAGGTGGGGATCCTGAGATCGGTGAAAACAATAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTACGGTTCTCTATATCTCCAACCGCATTTTTCCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTTTTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTATCTGATGCCCATAGGAATGCCGAGATTAATGGCATAAAAAACATTAGGTTTATATGTTCAAAGGCAGAGGACGTTATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAACAAGATGATTCTAACACCCCTAAAAGTGGCAATGACATTCTTGAGGATAATGCCTGCCCAGAGGCTGAAAATGGTGAAATGGCATCTCATTGTGCAGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGATAGCACTTCCGAACAAGTTGTTGGGATATCTGAACAGGCAGAGAACGTGACAGGATCTCAGTTAAGGGATGATGTAAATGTGCCTAAGGAACAAAGTGATGATCCAAATGTCTGTGGAAGTGGCAATGACATTCCTGGGGATAGTACCTGCCCAGGGCCTGAAACCAGTGAAATGACATCTCGTTCAGAAAATAACAATGCAGAAGTTGGAAGTGGTGAAAATGGGAACACTTCCATGCAACAGTTCAAAAATATTGTTGCCATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCCTAAAAATTGAGAAAGGTAATAAAGACAATAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2655 0.4456 MAEPVTNIQLSPSKTLGSINGHDSIVEPNQTLSQDAQLNQENDVVVSTGKRNREENDGEESSLHPMWKTSLCSFYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGEKYAVSEDVMMTEAVVDDDDYGSNHALSKCLVHLPRKWSSENLRNFLNEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVIPRSFEKKSNPSVASHQELDEGVDVPSSGALDAETNNDKLAVDGSVSKTRNLRDVVTPLAHIPYADQLEQKKTSLMQILKKLTRNARKACPNGVSLPDWILKSREIGGLPCKLEGIIESPIVNGYRNKCEFSVGYSLEGNVTVGFMMGNFREGVTAVEEPVECPNVSNIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTSGNTDPAVTFGGIAEVMLIVQVSTANFDDALVAAEFKRLAQAFVAGGATSQCPTLPLTALIVQDHQGISNVAPADAPLHLLTLPKAGGDPEIGENNNAMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKQDDSNTPKSGNDILEDNACPEAENGEMASHCAENNNAEVGSEVQKDSTSEQVVGISEQAENVTGSQLRDDVNVPKEQSDDPNVCGSGNDIPGDSTCPGPETSEMTSRSENNNAEVGSGENGNTSMQQFKNIVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01167 884 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 84 884 IPR045850 -
Phac11g01167 884 Gene3D Vaccinia Virus protein VP39 747 884 IPR029063 -
Phac11g01167 884 MobiDBLite consensus disorder prediction 681 766 - -
Phac11g01167 884 Gene3D Vaccinia Virus protein VP39 546 645 IPR029063 -
Phac11g01167 884 CDD AdoMet_MTases 575 629 - -
Phac11g01167 884 SMART c3hfinal6 66 94 IPR000571 GO:0046872
Phac11g01167 884 MobiDBLite consensus disorder prediction 681 714 - -
Phac11g01167 884 MobiDBLite consensus disorder prediction 226 253 - -
Phac11g01167 884 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 94 IPR000571 GO:0046872
Phac11g01167 884 SUPERFAMILY CCCH zinc finger 64 99 IPR036855 GO:0046872
Phac11g01167 884 Gene3D - 58 100 - -
Phac11g01167 884 Coils Coil 284 304 - -
Phac11g01167 884 MobiDBLite consensus disorder prediction 741 766 - -
Phac11g01167 884 MobiDBLite consensus disorder prediction 1 26 - -
Phac11g01167 884 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 277 884 IPR029063 -
Phac11g01167 884 Gene3D - 345 545 - -
Phac11g01167 884 Pfam Methyltransferase domain 573 631 IPR025714 -
Phac11g01167 884 ProSiteProfiles Zinc finger C3H1-type profile. 66 95 IPR000571 GO:0046872
Phac11g01167 884 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 274 884 IPR010280 GO:0006396|GO:0008173
Phac11g01167 884 SUPERFAMILY RNA-binding domain, RBD 154 227 IPR035979 GO:0003676
Phac11g01167 884 ProSitePatterns RNA methyltransferase trmA family signature 1. 779 811 IPR030390 -
Phac11g01167 884 Pfam tRNA (Uracil-5-)-methyltransferase 768 819 IPR010280 GO:0006396|GO:0008173
Phac11g01167 884 Gene3D - 151 220 IPR012677 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac11g01167 tRNA_U5-meth_tr 1.3e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01167 K15332 - gmx:100816103 1460.28