Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01136 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCAAGCTCAAACCCTAATAATAATCCTAACCCTAGTTCAAATCCGGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTAGTTCTGTCACCAAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAAAAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGGCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGACCCCTCTAGAGCCTTGGGAGATTTGACAGGCATAAAGAAGCACTATAGCCGAAAACATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAAAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAGTGTGAGGCTAACAACAGTTCCAGCTGCTTTAAGCAACTCGAGAAAAGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGATTTCACTCAGATCAATTAGGTGGTTCAGGAACATTAGAACCGTTGGTGAATTATGCTGACGCAGACCATCATCATCATCATAATCACCAACAACAACAGCAAAAGCTAAGGCTACCACTCTGGCTGGACCACCAGGCCAATCCACAAGTATTTCACCACCCTCTTATTAACTTCCCAACCAAAACTAGTGCTTTCACTTCTTCGGGGCCAAACCCTGTGCTTGATGGGGTGCAAACGATGGACATGTTTGGGCCAGAGTTTGTGAATTACCGTTGCCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGCGCAGGCTCTAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACGCTGTTGCAGAAAACTGTTCAAATGGGATCTATGAGGGTGAATGACAACACGTTTCGCTCCATAGGCAGCAATAGAAACAGCAACCACAACAATGCTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGGTATTTATTAAATGATGACTCAAACAACTCGTTTGTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCATCAATTATGGGAAAGCAATTACACTCCATAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAATAACATTGAATCAATAAGGAGACCTTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTATGTCTAG 1620 0.4574 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNPNPSSNPAKRRRSLPGTPDPDAEVVVLSPKSLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEESVRLTTVPAALSNSRKDHHLTNAQASRIPQIFSGFHSDQLGGSGTLEPLVNYADADHHHHHNHQQQQQKLRLPLWLDHQANPQVFHHPLINFPTKTSAFTSSGPNPVLDGVQTMDMFGPEFVNYRCPEASFGGANLSVLPPHGLKQEQEENKGDLSHSAGSNLYLSSNQNPPHYMSATTLLQKTVQMGSMRVNDNTFRSIGSNRNSNHNNAVNNVVVEVQKLDELVSVEGCTNLGGGGGYLLNDDSNNSFVVVNGTKGLEHMVMPVDEETTASIMGKQLHSISSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01136 539 MobiDBLite consensus disorder prediction 1 42 - -
Phac11g01136 539 SMART c2h2final6 69 91 IPR013087 -
Phac11g01136 539 SMART c2h2final6 111 141 IPR013087 -
Phac11g01136 539 SMART c2h2final6 146 166 IPR013087 -
Phac11g01136 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 513 IPR031140 -
Phac11g01136 539 MobiDBLite consensus disorder prediction 1 54 - -
Phac11g01136 539 Gene3D Classic Zinc Finger 47 122 - -
Phac11g01136 539 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Phac11g01136 539 FunFam protein indeterminate-domain 12-like 48 117 - -
Phac11g01136 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Phac11g01136 539 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Phac11g01136 539 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Phac11g01136 539 Gene3D Classic Zinc Finger 123 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01136 Phac-Chr11 7646243 7649774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01136 39 210 IDZ Gene Family AT3G45260 86.628 5.65e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g01136 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01136 K25870 - gmx:100817691 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02036 5 40287188 40290063 Phac11g01136 11 7646243 7649774 PCT