Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01127 ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAAAATGCATTCTGTGATAGGGAATGTGAGAAAGATGCTGGTGTTAGTTGTTGGTCCTCTTCCACTTCTTCATCTTCTAGTTCCTCTTCAGCTCGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTAGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTACGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGGCCGAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCTTCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACCGAGGTCAGCCAAGACGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTACTCTTTCTAAGGGGTGAAAATGGTGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCAGAATCAGTTATTGGTAGCCAGAACTGCTACCCCAATGTCCTTTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTTCCATATCAAAAATATGTCAAAAGCATCAAGAATCCACTGAGCACTGGGACAAGATTCAAAATGAGACTTGAAATGGATGAATCTCAAGAAAGAAGGTGTAACAGTGGCACGTTGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATTTTGAGAGTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCACATCACTGCAGCACGAGGCAGTGGGTTGGTGGGCTTTGATGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACTGGTTTTGTGTCACTCTACTATGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGCACTCCAAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTTAGTAGTGTTCACCCCTTCAGTTATGCAGGCTTTGTGGAAACAAACAGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTTCCTTATGGGGACATTCACCAAGCTGGTCAAGCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAGAGAGAGAATGTCCCATTTAATAAACCATCCACTCAGGCAGGAATCATTGTAAATGAAGTTGGACGACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTTCATTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAATGTCCAGGGAAAAGTAAATGCATGCAAATTATTCGGGTTTTCTTTGTCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTCCTAAAAGATCCTGACAAGGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGTGATGTGGTGTGCAAGATCCATATATACACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2379 0.4464 MEFDLNHEVTEVEKNAFCDRECEKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPLSTGTRFKMRLEMDESQERRCNSGTLIATSDLDPYRWPKSKWRCLMVRWDEDFESNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHHITAARGSGLVGFDESVRSPKVLQGQENTGFVSLYYGCDTVTKPLGFEMSTPSHPNLGSAEVRKVTSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAGQASLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGRPELPNEHKLQDNLSAAASLGAANMGVPNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVCKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01127 792 SUPERFAMILY CAD & PB1 domains 667 743 - -
Phac11g01127 792 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Phac11g01127 792 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Phac11g01127 792 FunFam Auxin response factor 659 753 - -
Phac11g01127 792 CDD B3_DNA 162 264 IPR003340 GO:0003677
Phac11g01127 792 FunFam Auxin response factor 162 266 - -
Phac11g01127 792 Gene3D - 328 398 - -
Phac11g01127 792 ProSiteProfiles PB1 domain profile. 664 746 IPR000270 GO:0005515
Phac11g01127 792 Gene3D - 660 753 - -
Phac11g01127 792 FunFam Auxin response factor 327 400 - -
Phac11g01127 792 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phac11g01127 792 Gene3D - 162 266 IPR015300 -
Phac11g01127 792 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Phac11g01127 792 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 753 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac11g01127 792 SMART B3_2 164 266 IPR003340 GO:0003677
Phac11g01127 792 Pfam AUX/IAA family 655 748 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01127 Phac-Chr11 7524628 7529990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01127 46 792 B3 DNA Binding Superfamily AT5G60450 60.789 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac11g01127 AUX_IAA 4.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01127 - - gmx:100783513 1449.88