Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01122 ATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTTGATGATACATATAGGAAAATGAAGATATCTGGGGCCACTGATCTAGCATCTAAGGGTCAGGGAGCATCAGATAGCAGTAGTGTAAAGGTGAAAGGTGAAATTGATGATTCCTTCCAACCAGAAACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGGGGATTTGGTCAAGTGTGATGATCGAAGATGCCAGGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTGCAGAAGGCATCCCACCGGTTCCTGATAAGTTTTATTGTGAACTATGTCGGCTAAATCGTGCTGACCCATTTTGGGTTGCAGTGGCACACCCTTTGCTTCCCGTGAAGTTAACAACAACGAGCAATCCAACTGATGGAACCAACCCTGTGCAGAGTGTGGAAAGAACATTTCAACTTACTAGAGCAGACAAGGACTTGGTTTCCAAACCAGAAGTTGATGTTGAGGTTTGGTGTATGCTCCTAAACGACAAGGTCCCATTCAGGATGCAATGGCCACAATATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCCCAGTTGCTTGGAGCTAATGGGCGGGATGATGGTCCAATTATCACACCATACACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTCTAGGGGTTCGTATTGTTAGAAGGCGTAACATGCAGCAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCGATTTGAAGACGCTCTTGCACGTGTGTGTCGTTGTGTTGGGGGTGGAAACACAGATGGTGATGCTGATAGTGACAGTGATTTGGAAGTCGTTTCAGATACTTTCAGTGTCAACCTTCGCTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAACCCTTGTATTCACATGGGTTGCTTTGACCTTGAGGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATTATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGTTAAATTGTGGTGAAGAAATTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGACAAAGAGTGAAAGTGAACGCCAGGAATTAGGGAGTCTAGCACAGTGGCATCTTCCTGATGGATCCCCATGCGTTTCAGCTGATGGAGATTTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCAACTGGTTTAAAACTTGGCATCAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGTTTTTGGAAATCCTGAACAGGTTGTTATTCCAATGAGCAGTAGTGCTACTGGAAGTGGCCGAGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGAATATCGACTATTCTGCTGCAACTGGCATTGAAATAGATTCTCTGTGTCTCAATAATGTTGATTTAGCATATGAATATACTGCACATGACACTTCTGCTCAGGCGGGTGGTACAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTTTTGGTATCGCCTCCGATTGCGTATAGGAACAACCAAAATGATGCTACAGATGGTTATTCTGTACAACCACCTGTAATAGTTGATTCATATACTGAAGATCATAATCTTGTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGATGATTTTGGGATGTCTTCCCTGTGGTCTATGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAACTATTTGGTTCCGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAACATGGTCCTGTGAATTGCTCTTCATCACTAAATGGTTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGTAGTATCTTGCATGATTCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGTGGTGATGATCCCTCACTTCAGATTTTTCTCCCCACTAGACCAGCGGACTCATCCATTCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAAGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAGCAATGGTGATGCTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGATGTTGGCACAAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGATCTGACAGGCCAAGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGACGTTCTGTAAGACCCCGTTTGTACCTTTCTATTGATTCGGATTCAGAGTAA 2487 0.4335 MWAKKNAGGKEQVAKLVDDTYRKMKISGATDLASKGQGASDSSSVKVKGEIDDSFQPETKIRCLCGSRLETGDLVKCDDRRCQVWQHISCVIIPEKPAEGIPPVPDKFYCELCRLNRADPFWVAVAHPLLPVKLTTTSNPTDGTNPVQSVERTFQLTRADKDLVSKPEVDVEVWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNTDGDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFNPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMLNCGEEITEVEVKPDGSWRVKTKSESERQELGSLAQWHLPDGSPCVSADGDFKRVDTLKQVKQEGVSDSPTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKLKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGNIDYSAATGIEIDSLCLNNVDLAYEYTAHDTSAQAGGTEVIVLSDSEEDNDLLVSPPIAYRNNQNDATDGYSVQPPVIVDSYTEDHNLVGGNSCLGLFPNDDDFGMSSLWSMPSGSQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGSILHDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSIQNELRDQANVANGVCTEEDWISLSLGGGAGGSNGDASTQNGLNSRHQIPTRDVGTNTLDDTASLLLGMNDVRSDRPSRQRSDSPFSFPRQRRSVRPRLYLSIDSDSE* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01122 828 CDD PHD_Bye1p_SIZ1_like 62 113 - -
Phac11g01122 828 ProSiteProfiles Zinc finger SP-RING-type profile. 294 377 IPR004181 GO:0008270
Phac11g01122 828 MobiDBLite consensus disorder prediction 747 828 - -
Phac11g01122 828 ProSitePatterns Zinc finger PHD-type signature. 63 113 IPR019786 -
Phac11g01122 828 MobiDBLite consensus disorder prediction 752 784 - -
Phac11g01122 828 Pfam PHD-finger 62 114 IPR019787 -
Phac11g01122 828 SUPERFAMILY FYVE/PHD zinc finger 55 117 IPR011011 -
Phac11g01122 828 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 2 610 - -
Phac11g01122 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 119 IPR013083 -
Phac11g01122 828 CDD SP-RING_Siz-like 308 357 IPR031141 -
Phac11g01122 828 Pfam MIZ/SP-RING zinc finger 307 355 IPR004181 GO:0008270
Phac11g01122 828 MobiDBLite consensus disorder prediction 489 512 - -
Phac11g01122 828 MobiDBLite consensus disorder prediction 461 480 - -
Phac11g01122 828 MobiDBLite consensus disorder prediction 462 478 - -
Phac11g01122 828 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 395 IPR013083 -
Phac11g01122 828 SMART PHD_3 62 114 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01122 Phac-Chr11 7495159 7506784 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g01122 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01122 - - gmx:100793735 1503.03