Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01101 ATGGACTTCACAGACTTGACCTTGTTATTCGCGCAACGCCGCGAGGTGGCCGCGGCGGAGGCCATGGATTCCGACCTCGACTTGGCCTATCGCCTTCAGTTGCAGGAAGCTCTCGAGGCCTCCCTGGCTGTGCATCCCTCCTCCTCGTCCGCGGATATTGAACAGTCTATCGTCGACGGCGAAGGAGTGCTGAACGCGATGTCGCTGCAGAATGAGGAGCTGGCGCGTGTGGAATGCGAGATGAAGGACCGGGAGCAGAGCCAGAGGGAAATGCAGAAGATGAGGGAGGATGTCAGCCGAAGGATCCACGACGAGAGGGTGGCGAAGGAGATTTCGACGATGTCTGAGGAGGAGTGGCAGCAATGGGGCGATAACTTTGAGAAACCGTTCGACGAGGGTTCGTCGTCGGGGAGGAGGGAGGAAGGCGTGGTTAGGGTTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGAGAGGGTTGTGTTGTCTGGGTTAGGGGTTGCGATTTGTGACCGCAGTGATAATTTGATATTCCAGGTTTCTAAGTCGGTGGTTGGGAATGGAACTAGCAAGGTCGCTGCGGAGATTAAGGCGTTGATTGAAGCCTTCGATGTGGCCCTTTCTTTGGACTTGAAGCGCATCATTTACTTTTCCGATTATCATCCGCTTTTCCAATATGTGAGACGAAAATGGTTTCCAAAACAGAGGAAGATTGCCATGTTGATTGATCGAGTTCATCTGCTTCAAAGGAAGTTTACATACTGCAGTGCAAGGCTTTTGGCCAGACAGGATGTCAAGTTTGCATTTAAGCTTGCACGAGATGCGATTGTGTCTCAGTCCATGAGACCCAGGGAACCTGGGAGTACGAAGAGTTTGAATGAAACTTGTGTTATATGTTTGGAGGATACTGATGTGAGTCAGATTTTTTCAGTTGATGAATGTCAACACCGCTACTGCTTTTCTTGCATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGAATTGTGCCTAAGTGCCCTCATGAGGGATGCAAGTATGAGCTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATACCATGCGGCAACGCAAATTGGAAGCTTCAATTCCTGCTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAAAACTGAGGTCTTTGAGTACTCGAAAAATCTTATTGGAGAATCTGACCTGTCGGAACCCAAGAAATGCTTAAAATGCCACGGCCTTTTTTGTTTTAACTGCAAGGTCCCTTGGCATACCGGTATGACATGTTATATTTACAAAATGTCGAATCCCAATCCTCCTGCTGAAGATTTGAAGCTGAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTCGAATTTTGCTATAACTGTGGTGCTGAGTGGAAGGACAAAAAATCAACATGTGTTTGCCCACTCTGGGCAGAGGACAATATTTGGATGGAGGAAAGGGACTCAGAAGATGATGATGATGATTATGATGATTATGATGATGATGATGATGATGGCTTTTTATTGTGA 1632 0.4755 MDFTDLTLLFAQRREVAAAEAMDSDLDLAYRLQLQEALEASLAVHPSSSSADIEQSIVDGEGVLNAMSLQNEELARVECEMKDREQSQREMQKMREDVSRRIHDERVAKEISTMSEEEWQQWGDNFEKPFDEGSSSGRREEGVVRVYLKGLVSEENVRGERVVLSGLGVAICDRSDNLIFQVSKSVVGNGTSKVAAEIKALIEAFDVALSLDLKRIIYFSDYHPLFQYVRRKWFPKQRKIAMLIDRVHLLQRKFTYCSARLLARQDVKFAFKLARDAIVSQSMRPREPGSTKSLNETCVICLEDTDVSQIFSVDECQHRYCFSCMKQHVEVKLLHGIVPKCPHEGCKYELLVDSCQKFLTQKLTDTMRQRKLEASIPAAEKVYCPYPRCSALMTKTEVFEYSKNLIGESDLSEPKKCLKCHGLFCFNCKVPWHTGMTCYIYKMSNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKSTCVCPLWAEDNIWMEERDSEDDDDDYDDYDDDDDDGFLL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01101 543 Coils Coil 77 97 - -
Phac11g01101 543 Gene3D - 436 537 - -
Phac11g01101 543 Pfam Reverse transcriptase-like 163 277 IPR002156 GO:0003676|GO:0004523
Phac11g01101 543 ProSiteProfiles TRIAD supradomain profile. 294 518 IPR044066 -
Phac11g01101 543 SUPERFAMILY RING/U-box 452 515 - -
Phac11g01101 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 378 IPR013083 -
Phac11g01101 543 ProSitePatterns Zinc finger RING-type signature. 316 325 IPR017907 -
Phac11g01101 543 FunFam RBR-type E3 ubiquitin transferase 293 378 - -
Phac11g01101 543 Pfam IBR domain, a half RING-finger domain 372 438 IPR002867 GO:0008270
Phac11g01101 543 Pfam IBR domain, a half RING-finger domain 457 506 IPR002867 GO:0008270
Phac11g01101 543 CDD Rcat_RBR_unk 464 499 - -
Phac11g01101 543 ProSiteProfiles Zinc finger RING-type profile. 298 342 IPR001841 -
Phac11g01101 543 FunFam RBR-type E3 ubiquitin transferase 144 281 - -
Phac11g01101 543 SUPERFAMILY RING/U-box 296 377 - -
Phac11g01101 543 Gene3D - 145 283 IPR036397 GO:0003676
Phac11g01101 543 CDD BRcat_RBR_unk 378 438 - -
Phac11g01101 543 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 108 512 IPR031127 GO:0004842|GO:0016567
Phac11g01101 543 SMART ibrneu5 365 438 IPR002867 GO:0008270
Phac11g01101 543 SMART ibrneu5 451 506 IPR002867 GO:0008270
Phac11g01101 543 FunFam RBR-type E3 ubiquitin transferase 436 542 - -
Phac11g01101 543 MobiDBLite consensus disorder prediction 520 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01101 Phac-Chr11 7399029 7402992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01101 130 497 C3H Transcription Factor Family AT2G19610 34.225 2.40e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01101 - - gmx:100790037 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac11g01101 11 7399029 7402992 Phac11g01101 11 7399029 7402992 ECH