Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01082 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGTTACCGTTAGAGAAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAGTCAGGGACTTCGAATTCCTCCGTGGTGAATGCGGACGGGTCGAGTAACGGCGGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTGGAAGGCGCGAGCGACGTCGTAACGAAGGAGCTGTTCCCGGTGAGTGAAGGAGTGGCTACGTCGTCGTTTTCAGCGAGGAAAGGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGGAATAGTGAGATAAAGATGCTTCAGCCGCAACCTCAGACTCAGACTCCGCAACCGGCGAAGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTAACGCTGACATCAATTTCAATCTGAGTGATTATGAGGATGATTTTAAACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACTGGTTTCTCAAGAGGAAGTTCTAAATACCGTGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAACCAAGTACATATGAAGGAGAGATAAAATCTGCAGCCATTAATGAAGTTGGCAATCAGAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGACCTGGTCCCAAAGAAAATTGGGAGCAACTTCAGTTCGCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTAATTCAGGAATTGGTAATCCATCTTTGAAAAGACTGGTTGTAAGTGAAGATTGTCCTTCTGTATGGAATGGAATGTGTTCTAGTTTCTTTCCCAATGAGGAAAAAACAGAGAGAATGAACATGGATCATTCAAAAGGATTCCCCAACTGGGCGTGGCAAACACATGCCCAGGTGAATGCTACCCCAGTGCCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTGCAATCCCCACCAGAGTCTCTGTTTTACTTCATCCAGCGCGCATTCCAGCAATGCGTCCGAATATTATTACCAGGTTAAGCCCCCGCAGGCACCACTATAG 1413 0.4791 MLDLNLNAEWTDSARDGDSPLPLEKFPEGSRNQMAESGTSNSSVVNADGSSNGGCDEDSCSTRADDVYTFNFDILKVEGASDVVTKELFPVSEGVATSSFSARKGFVDLAFDREGGNSEIKMLQPQPQTQTPQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNLSDYEDDFKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEIKSAAINEVGNQNLDLNLGIATPGPGPKENWEQLQFASVHYNTHGGISSMMETNVNSGIGNPSLKRLVVSEDCPSVWNGMCSSFFPNEEKTERMNMDHSKGFPNWAWQTHAQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNCNPHQSLCFTSSSAHSSNASEYYYQVKPPQAPL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01082 470 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Phac11g01082 470 Gene3D AP2/ERF domain 239 283 IPR036955 GO:0003700|GO:0006355
Phac11g01082 470 SMART rav1_2 240 288 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 MobiDBLite consensus disorder prediction 1 59 - -
Phac11g01082 470 CDD AP2 239 284 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 MobiDBLite consensus disorder prediction 119 149 - -
Phac11g01082 470 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Phac11g01082 470 MobiDBLite consensus disorder prediction 121 137 - -
Phac11g01082 470 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 317 - -
Phac11g01082 470 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Phac11g01082 470 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 SUPERFAMILY DNA-binding domain 239 283 IPR016177 GO:0003677
Phac11g01082 470 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Phac11g01082 470 MobiDBLite consensus disorder prediction 32 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01082 Phac-Chr11 7211247 7216526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01082 1 430 AP2-EREBP Transcription Factor Family AT5G60120 47.186 3.30e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phac11g01082 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01082 K09284 - gmx:100788303 778.089