Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01025 ATGTCTTCTGATTCTGCTGAACTCAATAACCATACGCAATGGAAGCTCGAAGAGGTTTTTTCAATTATTATAGTATGCGTTATCTTTTTTACACTGAGTAATTGCTTCGGCATATTCAACCGTCTGTTGTGTGGAATTTGCCGAGGCAGAAACCAGGTTCCAAGGCGACTTCTAGATGAGACGGTTCTCGACGATGATCCTTCCATGCAGGTTCAAAGCCAGGGATTGGAGTTCTGTGTGGTGCAGTCTCTTCCAACGATTGAGTTCAAGAGAAACGAGGGAGAACAAGAGAAGGGAAGTAATGTGGAATGTGCCATTTGTCTCGGAGAGTTTGAGGAAGGTGAGTGGCTGAAACATCTTCCACAGTGCAGCCACAGGTTCCATGTTTCATGCATTGACACTTGGTTTCAGTCTCATTCAAATTGTCCTCTTTGTAGAGCATCTGTGAATCATCACGTGCTACACTGTTCCGTAGCTGCTTCTCACACAACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGAAAATCAACCCAGCACACAACACTTCCTTCCCTCTTGA 567 0.448 MSSDSAELNNHTQWKLEEVFSIIIVCVIFFTLSNCFGIFNRLLCGICRGRNQVPRRLLDETVLDDDPSMQVQSQGLEFCVVQSLPTIEFKRNEGEQEKGSNVECAICLGEFEEGEWLKHLPQCSHRFHVSCIDTWFQSHSNCPLCRASVNHHVLHCSVAASHTTLLQPLRREDFERENQPSTQHFLPS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01025 188 PANTHER RING-H2 FINGER PROTEIN ATL16 21 158 IPR044600 GO:0016567|GO:0016740
Phac11g01025 188 SMART FANCL_C_2 100 154 - -
Phac11g01025 188 SUPERFAMILY RING/U-box 87 152 - -
Phac11g01025 188 FunFam E3 ubiquitin-protein ligase ATL6 64 152 - -
Phac11g01025 188 Pfam Ring finger domain 103 146 IPR001841 -
Phac11g01025 188 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Phac11g01025 188 SMART ring_2 104 145 IPR001841 -
Phac11g01025 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01025 Phac-Chr11 6679300 6679866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01025 22 149 C3H Transcription Factor Family AT1G72220 36.842 1.13e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01025 - - gmx:121172630 272.707