Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01017 ATGAGTAAGTGTTTGATGTTAGTGGGGGAGGAGGGTGAAGGGGCATCAAGAGAGAGAGTTGTGAAGAGTGGTAAGTTTAAGTGCAAGACTTGTGACAAGCAATTTCTTTCCTTTCAAGCCCTTGGAGGCCACAGAGCTAGCCACAAGAAGTTAAAACGCATGGCTTCAAACCTTTCGTGTTCGGTGGTCACACCAAAATTGCACCAATGCTCAATTTGTGGACTCGTGTTTGGTATTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCCTCAATTCATCATCACCAAGATCTGCCAAAATCTACCGCCACTAAAAACCTTCGTTTCTGCTTCGACTTGAACTTGACACCCTACGAGAATCATCTCAACCTCAATTTAAGGACACCTGTTTCACATTTGTTCATGTGA 417 0.4365 MSKCLMLVGEEGEGASRERVVKSGKFKCKTCDKQFLSFQALGGHRASHKKLKRMASNLSCSVVTPKLHQCSICGLVFGIGQALGGHMRKHRVSSIHHHQDLPKSTATKNLRFCFDLNLTPYENHLNLNLRTPVSHLFM* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01017 138 PANTHER ZINC FINGER PROTEIN ZAT5 18 123 - -
Phac11g01017 138 SUPERFAMILY beta-beta-alpha zinc fingers 26 90 IPR036236 -
Phac11g01017 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Phac11g01017 138 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Phac11g01017 138 Gene3D Classic Zinc Finger 23 90 - -
Phac11g01017 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Phac11g01017 138 Pfam C2H2-type zinc finger 68 91 - -
Phac11g01017 138 Pfam C2H2-type zinc finger 26 50 - -
Phac11g01017 138 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Phac11g01017 138 SMART c2h2final6 68 90 IPR013087 -
Phac11g01017 138 SMART c2h2final6 26 48 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01017 Phac-Chr11 6594448 6595031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01017 1 124 C2H2 Transcription Factor Family AT2G28710 42.336 2.19e-27 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac11g01017 zf-C2H2_6 1.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01017 - - gmx:112998408 187.963