Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01011 ATGCAAATAACCAGTGCATTAGCGAAAGGCAACCCTCTTCTTTTCCCCTTATCTAGATTTCTGTGTGTGCGTCATCATTCATCAGCCAACTTGTTTGTCGCAGGGCTTTCCTGGGATACCAATGAACCGATTCTGAGAGATGCCTTTGAGCAGCATGGTGAAATCATTGAAGTTAGAGTAATATGTGATCACGTGACTGGGAAATCAAGAGGTTATGGATTGGTGCGGTTTGTTTCTGAAACTACAGCTGCTACAGCTCGCAAAGAAATGAATGGCCAGATACTGGATGGCAGACGCATTCGGGTTAGTTATGCACACAAACGCTAG 327 0.4465 MQITSALAKGNPLLFPLSRFLCVRHHSSANLFVAGLSWDTNEPILRDAFEQHGEIIEVRVICDHVTGKSRGYGLVRFVSETTAATARKEMNGQILDGRRIRVSYAHKR* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01011 108 SMART rrm1_1 30 103 IPR000504 GO:0003723
Phac11g01011 108 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 24 108 - -
Phac11g01011 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Phac11g01011 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Phac11g01011 108 Gene3D - 20 108 IPR012677 -
Phac11g01011 108 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 17 108 - -
Phac11g01011 108 SUPERFAMILY RNA-binding domain, RBD 26 107 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01011 Phac-Chr11 6563134 6565577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01011 30 108 Eukaryotic Initiation Factors Gene Family AT4G34110 34.177 2.54e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01011 K13195 - gmx:100306540 185.267