Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00991 ATGGAGGGCGAGAACGCGAGCAAGGTGATTGAGTTGGTGAGCGAGGTAGCGAGCAAGGTGATTGAGTTGGTGAACGAGGTAGCGAGCATCTCGGAGTATAGGCCTCCGGTGAAGAAGGAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGCTGATCCCGATGTTCGAGGAAATTAGGGACATGAAAGACCCGATCCCCAAGGAAACTTCCAAAGCCGTCCTCGCTTTCAAGGAAGCTCTTGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGTATTATGAATAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCATTGGGTGGTATTTCCTATGATAAACTTGATATATCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTCCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTAGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTATCAAGCGGTGGAGATCCTGGGGCACGCATAGAAAAAATAGCGATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATATAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAGGTCTATGGAGTCGGGACAAATGAAAAGAGTCATCAGGCTCCTGTTATCCCTGAAGATTTTCGATGTCCAATTTCCCTGGAATTAATGAAGGATCCTGTCATCGTTTCAACCGGACAGACTTATGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCTAATGGCATAGAGCCACCAAAACGGCCCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCTGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTCTTGTCTGTGCCTGACTCTCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTCTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCACGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACTATTGGATCTTCAGGAGCCATACCACCACTAGTGATACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCTCTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGGGTTATCCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCAATACTGGCTAGCCATCCTGAAGGGAAGGCTACCATTAGAGCTGCAGAGGCAGTGCCAGTTTTAGTAGAGTTTATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTAGAGCGTATGAGCAGGTTACTTGAGCAACAGCAGGAAGTTCCATCACAAACGGAAACTCAAGCTCTGAACGAGGAAACCCAACTTCCTTTGATTACTAACCCAGATGATTCGTAA 2013 0.468 MEGENASKVIELVSEVASKVIELVNEVASISEYRPPVKKEYCNLARRLKLLIPMFEEIRDMKDPIPKETSKAVLAFKEALESARELLRFGSEGSKLYLVLERDGIMNKFYEVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLSLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVSSGGDPGARIEKIAMLLKKIKDYVQTENIVKDDNLGGKGIFAKVYGVGTNEKSHQAPVIPEDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVILLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKATIRAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKAAQLLERMSRLLEQQQEVPSQTETQALNEETQLPLITNPDDS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00991 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Phac11g00991 670 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Phac11g00991 670 FunFam RING-type E3 ubiquitin transferase 539 657 - -
Phac11g00991 670 Pfam Armadillo/beta-catenin-like repeat 475 513 IPR000225 GO:0005515
Phac11g00991 670 Pfam Armadillo/beta-catenin-like repeat 392 431 IPR000225 GO:0005515
Phac11g00991 670 PANTHER U BOX DOMAIN-CONTAINING 36 638 - -
Phac11g00991 670 Pfam Neurochondrin 527 644 IPR008709 -
Phac11g00991 670 CDD MLKL_NTD 13 146 - -
Phac11g00991 670 Gene3D - 349 649 IPR011989 -
Phac11g00991 670 SMART arm_5 598 638 IPR000225 GO:0005515
Phac11g00991 670 SMART arm_5 433 473 IPR000225 GO:0005515
Phac11g00991 670 SMART arm_5 474 514 IPR000225 GO:0005515
Phac11g00991 670 SMART arm_5 556 596 IPR000225 GO:0005515
Phac11g00991 670 SMART arm_5 515 555 IPR000225 GO:0005515
Phac11g00991 670 SMART arm_5 392 432 IPR000225 GO:0005515
Phac11g00991 670 FunFam RING-type E3 ubiquitin transferase 265 338 - -
Phac11g00991 670 MobiDBLite consensus disorder prediction 338 358 - -
Phac11g00991 670 FunFam RING-type E3 ubiquitin transferase 348 499 - -
Phac11g00991 670 MobiDBLite consensus disorder prediction 340 356 - -
Phac11g00991 670 Coils Coil 626 646 - -
Phac11g00991 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Phac11g00991 670 SUPERFAMILY ARM repeat 363 638 IPR016024 -
Phac11g00991 670 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Phac11g00991 670 SUPERFAMILY RING/U-box 255 341 - -
Phac11g00991 670 CDD RING-Ubox_PUB 266 318 IPR045210 -
Phac11g00991 670 Gene3D - 11 125 IPR036537 GO:0007166
Phac11g00991 670 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Phac11g00991 670 MobiDBLite consensus disorder prediction 643 670 - -
Phac11g00991 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 338 IPR013083 -
Phac11g00991 670 FunFam RING-type E3 ubiquitin transferase 13 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00991 Phac-Chr11 6361045 6366029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00991 1 654 U-box Gene Family AT3G46510 70.213 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00991 - - gmx:100812160 1164.83