Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00973 ATGGCAGTGCCAAACATTTTTCTCTGCATTGCCTTCGTTATCTCCTTAACATGGATGGTTGAAGCACGAATTCCAGGGATTTACGCCGGCGGTGCATGGGAAAGTGCTCACGCTACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGGAACCTGTACAGCCAAGGCTACGGTGTGAACACGGCGGCATTGAGCACAGCGCTTTTCAACAATGGCCTTAGCTGCGGCGCGTGCTTTGAGATCAAGTGCGCGAACGACAGACAGTGGTGTCACTCTGGAAGTCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCCGAATACCGCGCCGGAATTGTCCCTGTTGCCTTTCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACCATCAACGGATTCCGTTACTTCAACCTGGTGCTCGTTAGCAACGTGGCGGGTGCGGGGGATATCGTGCGCATCTACGTGAAGGGGTCTCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGGCGCTGTCGTTTCGCGTGACGAGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCACCCCATTGGCAATTCGGTCAAACTTTCACCGGCAAAAATTTCCGAGTCTGA 780 0.559 MAVPNIFLCIAFVISLTWMVEARIPGIYAGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTINGFRYFNLVLVSNVAGAGDIVRIYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTSSDRRTSTSWNIAPPHWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00973 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Phac11g00973 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Phac11g00973 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Phac11g00973 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Phac11g00973 259 FunFam Expansin 165 257 - -
Phac11g00973 259 Gene3D - 22 161 IPR036908 -
Phac11g00973 259 SMART dpbb_1 68 155 IPR007112 -
Phac11g00973 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Phac11g00973 259 CDD DPBB_EXPA_N 33 160 - -
Phac11g00973 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Phac11g00973 259 FunFam Expansin 22 161 - -
Phac11g00973 259 Gene3D - 165 257 IPR036749 -
Phac11g00973 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Phac11g00973 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Phac11g00973 259 PANTHER EXPANSIN-A15 22 257 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00973 Phac-Chr11 6268643 6270946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00973 1 259 Expansin Gene Family AT2G39700 82.625 3.94e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00973 - - gmx:100809139 518.464