Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00945 ATGAATTCGGACACGCAACTCGGAACGCCGTCGTATTGGTGCTACAACTGCACCCGCTTCATTAACCTCTCCTCGCAAGCCACCATCGCCTGTCCCCACTGCCAGAGTGGCTTCGTCGAAGAGATCCGTGCCGACGCCTCGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCATCTTTCACTCCGCCGACAGGGGTTCCGTCGCCGCCGTCGCGACGCCGCCGGAAACCGCTCTCCCTTTAACCCCGTCATCGTCCTCCGGGGACCCGGCGATGACTCCGCCGCTGAACACGATGGCGCCAGCACCTTCGAGCTCTTCTACGACGACGGTGACGGCACTGGCCTCCGTCCGCTCCCGCCCACCATGTCGGAGTTCCTTCTCGGCTCAGGCTTCGACCGCCTACTCGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATCGAGATCGGTGAAGCGCTTGTGGAGACCGACGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGGTCCACGCGGAGGCGCGTGAGTTACCCTGCAAACATATTTACCACTCCGACTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCGTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTAACTATCTGGAGGCTTCCGGGTGGGGGATTCGCCGTGGGTCGATTTTCTGGCGGCCGGAGAGCTGGAGAGAATCATTTCCCGGTTGTGTACACGGAAATGGACGGTGGACTGAACTCGAACGGAGCTCCGAGGAGAATTTCTCGGTCGGTGAGAAGCAGTAGGGTTAGGGAGAGTCGAGGGTTTGGTAGGGTTATTCGCAATTTGTTTTCATTCTTTGGAAGGATTGGTTCTAGGAACTCTTCTTCTAGAAACTCTTCTTCCGAGCATGCTTCCGTGAGTAGAAGCCGTAGTCAAGTGAGTTCAGTCTTCAACAGAAGCTCACGGAGACATAGCAGAACTTTTGTTTTGGATGATTAA 1083 0.591 MNSDTQLGTPSYWCYNCTRFINLSSQATIACPHCQSGFVEEIRADASPRHRLSPFPDDHLSLRRQGFRRRRRDAAGNRSPFNPVIVLRGPGDDSAAEHDGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGEALVETDAHCAVCKEAFEVHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNSNGAPRRISRSVRSSRVRESRGFGRVIRNLFSFFGRIGSRNSSSRNSSSEHASVSRSRSQVSSVFNRSSRRHSRTFVLDD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00945 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Phac11g00945 360 MobiDBLite consensus disorder prediction 68 97 - -
Phac11g00945 360 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Phac11g00945 360 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
Phac11g00945 360 CDD RING-H2_RNF126-like 179 220 - -
Phac11g00945 360 Pfam Ring finger domain 178 220 IPR001841 -
Phac11g00945 360 SUPERFAMILY RING/U-box 159 230 - -
Phac11g00945 360 SMART ring_2 179 219 IPR001841 -
Phac11g00945 360 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Phac11g00945 360 MobiDBLite consensus disorder prediction 320 346 - -
Phac11g00945 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 224 - -
Phac11g00945 360 Pfam Protein of unknown function (DUF1117) 240 350 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00945 Phac-Chr11 6127343 6129541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00945 118 226 C3H Transcription Factor Family AT5G01980 44.954 2.08e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00945 K11982 - gmx:100792874 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g02209 5 41399409 41400389 Phac11g00945 11 6127343 6129541 PCT