Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac11g00900 | ATGGCGTCGACGGCGATCGAGGAAGTGCGAACTCTGTGGATTGGCGATTTGCAGTACTGGGTGGACGAGTCCTACCTCTCGCAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATTCGCAACAAGATGACGGGCCAGCCTGAGGGCTACGGCTTCGTGGAGTTCGTTTCTCACGCGGCGGCGGAGGCCTTTCTCCGCACCTACAACGGCACTCAAATGCCCGGTACGGAACAGACCTTCCGGCTTAATTGGGCCTCCTTCGGAGACTCTGGGCCCGACCATTCCATCTTCGTCGGCGATCTCGCCCCCGACGTCACCGATTTCCTGCTCCAGGAGACTTTCCGGGCCCATTATCCTTCCGTCAAAGGGGCCAAAGTCGTTACGGACCCCGCCACTGGCCGCTCCAAGGGCTATGGCTTCGTGAAGTTTACCGACGAGACGCAGAGGAACCGTGCCATGACTGAAATGAACGGTGTTTATTGCTCCACGCGTCCTATGCGTATCAGCGCCGCTACTCCTAAAAAGAACGCTTCTTTTCAAAACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCTGTGAATACTGTTGCGCCAGAAAACGATGTGAATAATACCACTATTTGTATTGGTAATTTGGATCTTAATGTGACAGAGGATGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTCGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGGTTTTGTTTTTTACCCTTAAACTTTAACATGTGA | 810 | 0.5062 | MASTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFTDETQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQNQYAPPKAMYQFPAYTAPVNTVAPENDVNNTTICIGNLDLNVTEDELKQTFMQFGDIVSVKIYAGKGYGYVQFGTRFCFLPLNFNM* | 270 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac11g00900 | 269 | CDD | RRM1_SECp43_like | 11 | 91 | - | - | |
| Phac11g00900 | 269 | Gene3D | - | 96 | 173 | IPR012677 | - | |
| Phac11g00900 | 269 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 176 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 78 | IPR035979 | GO:0003676 | |
| Phac11g00900 | 269 | CDD | RRM2_SECp43_like | 96 | 175 | - | - | |
| Phac11g00900 | 269 | FunFam | Polyadenylate-binding protein RBP47B | 9 | 88 | - | - | |
| Phac11g00900 | 269 | SMART | rrm1_1 | 11 | 86 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | SMART | rrm1_1 | 215 | 268 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | SMART | rrm1_1 | 98 | 172 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | Gene3D | - | 199 | 261 | IPR012677 | - | |
| Phac11g00900 | 269 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 214 | 256 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 216 | 257 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 80 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 164 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | SUPERFAMILY | RNA-binding domain, RBD | 95 | 258 | IPR035979 | GO:0003676 | |
| Phac11g00900 | 269 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 90 | IPR000504 | GO:0003723 | |
| Phac11g00900 | 269 | FunFam | Polyadenylate-binding protein RBP47B | 89 | 187 | - | - | |
| Phac11g00900 | 269 | Gene3D | - | 9 | 89 | IPR012677 | - | |
| Phac11g00900 | 269 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 7 | 259 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac11g00900 | Phac-Chr11 | 5831832 | 5835563 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac11g00900 | 9 | 258 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 25.769 | 3.51e-15 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac11g00900 | - | - | gmx:100794427 | 509.99 |