Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00883 ATGGAGTCAGATCTTCAGCAGCACCCTCCCGTGTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCGTATTTTTCCAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGATGCTGATGCTGCTGCTGCTGATGCAGAGGAGGCACTTCCTACTCAAAATCCCTCAACCGTTGTTGCTGTTAAAGAAGAGGTCAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCCCTTGTTCTCCAACAACAACAACAGCATCAACAACAAAGTAATATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACACTGGACGACCACCTTTGCCAAACCAGATAGAGACTGGTCGTAGAAGTGCTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGCAAGGGGCATGGGGACTATGGGAGCTGTTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATGTCATCTAGGGCTGAAATTGGAAACAAAAGCAGTACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAATCAGGGCAATGAATTTATCCCTGGTTTCCCCGTTGGTTCATGGGACGATTCTGCAATAATGTCTGACAATATGACAGGTCGGAAGAGATACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACGTATCTGAAAGTCAGAATGAAGCAGGAGGCCAGCCTTCTACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACGTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACACCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGGTATGTTACAAACCAACCTCTATCACTCTCCTATGTCTGTCTAATGCACCCAAAATAAAATGA 1254 0.4394 MESDLQQHPPVFLDHHQQQTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADDADAAAADAEEALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQQQHQQQSNINNYGSSAPQNFYQNTGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNINIESGYAAARGMGTMGAVNNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKSSTQNNAENEGFAENQGNEFIPGFPVGSWDDSAIMSDNMTGRKRYREEDVKPFSGLNVSESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLHLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVEVCYKPTSITLLCLSNAPKIK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00883 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Phac11g00883 417 SMART finulus 348 398 IPR011598 GO:0046983
Phac11g00883 417 MobiDBLite consensus disorder prediction 1 27 - -
Phac11g00883 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 398 - -
Phac11g00883 417 FunFam Transcription factor bHLH130 family 343 410 - -
Phac11g00883 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 399 IPR036638 GO:0046983
Phac11g00883 417 Gene3D - 343 403 IPR036638 GO:0046983
Phac11g00883 417 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Phac11g00883 417 MobiDBLite consensus disorder prediction 72 92 - -
Phac11g00883 417 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00883 Phac-Chr11 5604440 5608678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00883 1 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.640 2.67e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g00883 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00883 - - gmx:100803833 621.313