Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00880 ATGGAGTCAGATCTTCAGCAGCACCCTCCCGTGTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCGTATTTTTCCAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGATGCTGATGCTGCTGCTGCTGATGCAGAGGAGGCACTTCCTACTCAAAATCCCTCAACCGTTGTTGCTGTTAAAGAAGAGGTCAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCCCTTGTTCTCCAACAACAACAACAGCATCAACAACAAAGTAATATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACACTGGACGACCACCTTTGCCAAACCAGATAGAGACTGGTCGTAGAAGTGCTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGCAAGGGGCATGGGGACTATGGGAGCTGTTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATGTCATCTAGGGCTGAAATTGGAAACAAAAGCAGTACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAATCAGGGCAATGAATTTATCCCTGGTTTCCCCGTTGGTTCATGGGACGATTCTGCAATAATGTCTGACAATATGACAGGTCGGAAGAGATACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACGTATCTGAAAGTCAGAATGAAGCAGGAGGCCAGCCTTCTACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACGTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACACCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGATAATCGCGATAAGTGTACGTGTTCACACAAGGAGCAGCAGCAGCAATAA 1251 0.4428 MESDLQQHPPVFLDHHQQQTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADDADAAAADAEEALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQQQHQQQSNINNYGSSAPQNFYQNTGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNINIESGYAAARGMGTMGAVNNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKSSTQNNAENEGFAENQGNEFIPGFPVGSWDDSAIMSDNMTGRKRYREEDVKPFSGLNVSESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLHLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSDNRDKCTCSHKEQQQQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00880 416 Coils Coil 382 409 - -
Phac11g00880 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Phac11g00880 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 412 - -
Phac11g00880 416 MobiDBLite consensus disorder prediction 1 27 - -
Phac11g00880 416 SMART finulus 348 398 IPR011598 GO:0046983
Phac11g00880 416 Gene3D - 343 415 IPR036638 GO:0046983
Phac11g00880 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 405 IPR036638 GO:0046983
Phac11g00880 416 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Phac11g00880 416 MobiDBLite consensus disorder prediction 72 92 - -
Phac11g00880 416 FunFam Transcription factor bHLH130 family 343 412 - -
Phac11g00880 416 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00880 Phac-Chr11 5604440 5608678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00880 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.670 1.52e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g00880 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00880 - - gmx:100803833 649.432