Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00869 ATGTCCACAACCACCGCATCTGGCGACGGCGCTCCATCTCTCCACTTCGATACGCCGACGCTGGACCGGGAGTTCGCGGAGCTTCTCCACACGATTTCCGAGCACGGTGGGTACGCTTACGTGAGCATGGCGGCGCTGGCGTCCGGCGGCGACATTCGCGCGGCGGAGGCGGCGCGTGAGATGGCATGGGAGCAGCTTCACTCCGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCGTGCCTCCACGTGGCGCGACACCACTACGGCAACGGCGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGAACGCTCCTCCGCAAGGATTTGGACTCCGCCGTCTCGAAAGTGTCGGAACAAACTCGAAGGCACGTTAGGGTTTCTGATTTGGGGGACTCGGATCACCGGCTCGTCGATCAGGAATTTGATGTGGCGGAGGTGGTCCAACTTTTACCAATGAAGTCTCTTTCTTCTAAGCTTGTGGTGAAGAAATCAGCGCTGTCGTTGGATAAATTCCTGAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGCGACTGTATGGCTCACTGGCCAGCCAAGGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGATCGCACAGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCTGAGTGGAAGCAAGAGCTCATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGATGCCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGACCAGATAAATGAGCTGCGGAGAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGTTACGATCTCTCAATGCCTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGATGTAGATGAAACGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACGAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAGTTCGGATGCATCCTAA 1242 0.5089 MSTTTASGDGAPSLHFDTPTLDREFAELLHTISEHGGYAYVSMAALASGGDIRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVSKVSEQTRRHVRVSDLGDSDHRLVDQEFDVAEVVQLLPMKSLSSKLVVKKSALSLDKFLKDHYLSRSPVIISDCMAHWPAKAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSDACSPGGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDETKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDSSDAS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00869 413 SMART cupin_9 262 412 IPR003347 -
Phac11g00869 413 ProSiteProfiles JmjC domain profile. 256 413 IPR003347 -
Phac11g00869 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 408 - -
Phac11g00869 413 Pfam Cupin-like domain 182 406 IPR041667 -
Phac11g00869 413 SUPERFAMILY Clavaminate synthase-like 177 405 - -
Phac11g00869 413 Gene3D Cupin 171 405 - -
Phac11g00869 413 FunFam lysine-specific demethylase JMJ30 171 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00869 Phac-Chr11 5561612 5566204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00869 166 404 Acyl Lipid Metabolism Gene Families AT3G45880 24.324 3.00e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac11g00869 Cupin_8 8.7e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00869 K24444 - gmx:100813075 758.829