Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00844 ATGGAGTCGGAGGATGATATGCATGACGCCAACGACATCGAGTCCCTCGACGATTTCTATAGCGGCGAAACCGAGGATGCACCGTTGGACTACTACAGCGATTACGACGATGATGCCGATGATTACTTCGATGAAGCCGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGATATCCAACAAAGACAGGAAGATGATGTCGCCAGAGTAGCAACTGTTCTTTCCATATCAAGAGTTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCAGACGAAGAAGGAGTCAGAAAAGCAGTTGGATTGTTGGAGAAGCCAATTGTCCAGCATGATAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAGTGATGGTCCCGGATGTTTGTTACTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGCTTAGTCTTTTAAAATCTGATGAAGATAAGCAGAAATATACACGTTATCTTCTTAGATCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTCACTTTTGATGTTGGTAGTGGTGGGAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGGATGGTCAGAACACGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGGGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCACTAGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAAGTAATTTATTTATTTTTGTTCAGTTTGCTTTGTAGTATTATATGA 1311 0.4279 MESEDDMHDANDIESLDDFYSGETEDAPLDYYSDYDDDADDYFDEADRIESRRPEQNFTILKESDIQQRQEDDVARVATVLSISRVFASILLRYYNWSVSRVHDAWFADEEGVRKAVGLLEKPIVQHDNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSISDGPGCLLLRCPDPTCGAAVGQDMLSLLKSDEDKQKYTRYLLRSYIEDNKKSKWCPAPGCEYAVTFDVGSGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGGWSEHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQVIYLFLFSLLCSII* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00844 436 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 422 IPR031127 GO:0004842|GO:0016567
Phac11g00844 436 MobiDBLite consensus disorder prediction 1 34 - -
Phac11g00844 436 Pfam IBR domain, a half RING-finger domain 204 267 IPR002867 GO:0008270
Phac11g00844 436 Pfam IBR domain, a half RING-finger domain 284 331 IPR002867 GO:0008270
Phac11g00844 436 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Phac11g00844 436 SUPERFAMILY RING/U-box 205 274 - -
Phac11g00844 436 SUPERFAMILY RING/U-box 286 334 - -
Phac11g00844 436 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Phac11g00844 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Phac11g00844 436 Gene3D - 263 427 - -
Phac11g00844 436 SUPERFAMILY RING/U-box 130 216 - -
Phac11g00844 436 ProSiteProfiles TRIAD supradomain profile. 131 345 IPR044066 -
Phac11g00844 436 CDD Rcat_RBR_ARI7-like 290 344 - -
Phac11g00844 436 CDD BRcat_RBR_ANKIB1 211 276 - -
Phac11g00844 436 SMART ibrneu5 204 267 IPR002867 GO:0008270
Phac11g00844 436 SMART ibrneu5 271 341 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00844 Phac-Chr11 5391196 5399407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00844 13 424 ARIADNE family AT1G65430 71.631 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00844 K11968 - gmx:100784195 829.706