Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00842 ATGGGAAGTTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGTGAAGCACACAAGCAAGCCCTCGTCCCCGCGAGGGCAAGGGCATGGGCACGAGCAGACGCGGAAGTCGAGCGTGGTGGCTCCTAGGGCGAGCGTGACGGCGCGTCCGCTGAACGTGGTGGCGAACCCGAGTCCGGGGAACATATTCGACAAGTACCAGTTCGGGAAGGAGCTGGGGCGCGGCGAGTTCGGCGTGACTCACCGTGTGGTGGATTTGGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGACGTGGAAGATGTGAAGAGAGAGGTGCAGATCATGAGGCACTTGCCTCGGCACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCTGTGTACCTCGTCATGGAACTCTGTGAAGGTGGTGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCTGCTGCTAATGTTGCCAAGACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACGGAGTGATACACAGGGACCTGAAACCTGAAAACTTCTTATTTGCAGATGCAAGCGAGACTGCTGCATTGAAGTCAATTGATTTTGGTCTTTCCACCTTCTATGTGCCTGGTGAAAAATTCAGTGAAATTGTTGGAAGTCCTTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACAAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAGGCGATCATCAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAAGCCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATAATACCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCAGATAACCTATCAGATGAGCAACTTGCTATGTTTAAGAAAATGTTCGATATGATGGATAAGGACAAAAATGGAAATTTGTCATTTGAAGAGCTCAAAGATGGCCTTTCAATGATAGGACACGCCATTCCTGATCCTGATGTCCAAATGTTAATGGAAGCTGCGGATATTGATGGAAACGGCACCCTTAACTATGATGAGTTTATCACAATGAGTGTTCACCTGAAAAAGATCGAAGGTGATGAGCATCTCTCTCAAGCATTCCGTTACTTTGACAAGAATCAGACCGGGTATGTTGAGTTTGAGGAGTTGAAAGATGCCTTAACAGATGATGAGTCGGAAGTCATGAACGACCAAGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGGGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTCGACAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGTTGTTTAAAGACACACCTATGAAAGTGTAA 1620 0.4611 MGSCISTQGVRTRKRVKHTSKPSSPRGQGHGHEQTRKSSVVAPRASVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVKREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADASETAALKSIDFGLSTFYVPGEKFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPSPFTRITVQEVLDNTWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQLAMFKKMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQMLMEAADIDGNGTLNYDEFITMSVHLKKIEGDEHLSQAFRYFDKNQTGYVEFEELKDALTDDESEVMNDQVIKDILNDVDLDKDGRISFGEFKAMMKTGGDWKMASRQYSRALLNALSFKLFKDTPMKV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00842 539 CDD EFh 444 507 IPR002048 GO:0005509
Phac11g00842 539 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Phac11g00842 539 Gene3D Transferase(Phosphotransferase) domain 1 153 333 - -
Phac11g00842 539 Gene3D - 334 509 - -
Phac11g00842 539 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Phac11g00842 539 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Phac11g00842 539 FunFam Calcium-dependent protein kinase 1 69 152 - -
Phac11g00842 539 SUPERFAMILY Protein kinase-like (PK-like) 57 333 IPR011009 -
Phac11g00842 539 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Phac11g00842 539 SUPERFAMILY EF-hand 362 512 IPR011992 -
Phac11g00842 539 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00842 539 FunFam calcium-dependent protein kinase 13 153 333 - -
Phac11g00842 539 SMART efh_1 444 472 IPR002048 GO:0005509
Phac11g00842 539 SMART efh_1 372 400 IPR002048 GO:0005509
Phac11g00842 539 SMART efh_1 481 509 IPR002048 GO:0005509
Phac11g00842 539 SMART efh_1 408 436 IPR002048 GO:0005509
Phac11g00842 539 MobiDBLite consensus disorder prediction 1 44 - -
Phac11g00842 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 499 - -
Phac11g00842 539 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Phac11g00842 539 CDD STKc_CAMK 66 324 - -
Phac11g00842 539 CDD EFh 372 432 IPR002048 GO:0005509
Phac11g00842 539 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00842 539 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Phac11g00842 539 Pfam EF-hand domain pair 443 507 IPR002048 GO:0005509
Phac11g00842 539 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Phac11g00842 539 FunFam Calcium-dependent protein kinase 7 334 510 - -
Phac11g00842 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Phac11g00842 539 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac11g00842 539 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Phac11g00842 539 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Phac11g00842 539 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Phac11g00842 539 Pfam EF-hand domain pair 385 435 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00842 Phac-Chr11 5385893 5390160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00842 1 534 EF-hand Containing Proteins AT2G31500 65.625 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phac11g00842 Pkinase 3.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00842 K13412 - gmx:100818929 962.214