Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00818 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGTGTTGTGTGCCAAATGTGACGTTGAAGTGCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAGGACAAGGCAGCTTTCATATTTTGTGTTGAGGATAGAGCACTCTTCTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTACTTGCACCAAAGGCAATGAAAAAGGTCATCATGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGTAAGGCAGCTTTGTTTCTCTATTTTAGTTGCATACATTAGCTAA 531 0.4369 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSTCTKGNEKGHHVEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKVRQLCFSILVAYIS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00818 176 CDD Bbox1_BBX-like 5 47 - -
Phac11g00818 176 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Phac11g00818 176 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phac11g00818 176 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac11g00818 176 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phac11g00818 176 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac11g00818 176 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phac11g00818 176 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 155 - -
Phac11g00818 176 CDD Bbox1_BBX-like 57 98 - -
Phac11g00818 176 Gene3D Classic Zinc Finger 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00818 Phac-Chr11 5177482 5180902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00818 1 163 Orphan Transcription Factor Family AT1G06040 68.824 2.35e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac11g00818 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00818 - - gmx:100779183 308.531