Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00817 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGTGTTGTGTGCCAAATGTGACGTTGAAGTGCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAGGACAAGGCAGCTTTCATATTTTGTGTTGAGGATAGAGCACTCTTCTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTACTTGCACCAAAGGCAATGAAAAAGGTCATCATGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGCTCAGAAGCAGTCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTAGGCCTTTTTGGTGAACAGTTCCCTGAGGAACCTTTATCCGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACTAGCAATGTTACCTCACAGAAGGCTTCTAAATCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGCCCTGGATGAAGATGATGAGGAACACTTCACTGTTCCTGATCTAGGCTAG 726 0.4545 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSTCTKGNEKGHHVEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKAQKQSLEFGELEWLADVGLFGEQFPEEPLSAAEVPQLPVTHTSNVTSQKASKSFMSYKKPRIEALDEDDEEHFTVPDLG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00817 241 CDD Bbox1_BBX-like 5 47 - -
Phac11g00817 241 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Phac11g00817 241 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Phac11g00817 241 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phac11g00817 241 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac11g00817 241 Gene3D Classic Zinc Finger 1 91 - -
Phac11g00817 241 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac11g00817 241 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phac11g00817 241 CDD Bbox1_BBX-like 57 98 - -
Phac11g00817 241 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00817 Phac-Chr11 5177482 5180902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00817 1 162 Orphan Transcription Factor Family AT1G06040 68.639 4.15e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac11g00817 zf-B_box 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00817 - - gmx:732574 427.172