Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00811 ATGCCACTTCCAGCGAAACCAATGAGGGATTCCGACGAGTCCTCGAGCCCTTCCAACAACCTGTGGGTGGGGAATCTGGCGCCGGATGTCACCGACGCCGATCTCATGGAACTTTTCGCCAAATACGGCGCACTCGACAGCGTTACCTCTTATTCTGCTCGCAGTTACGCCTTCGTCTTCTTCAAGCGCGTCGAAGATGCCAAAGCCGCAAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCAAACAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTTGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGGAATACTGCATGTGTTGAATATTTCAATTTAGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGGGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAAGCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGCCAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGGAAAGGCGATGGTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATAAACAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGGGGAATTATTCTATTGTAGAGTTTAGAAGTGTTGATGAAGCCCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAATGATCTAGTACATGGCAGTGATTACCCTGGCTTTTCTTCTGGAAGTAATGGACCGAGGCCTGATGTTTTGCTGAATGAGCATCCATTCCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAATTACCACCTAGCGGTATTATGGGTCCAAATGTACCAATGCGACCTTTTGGTCCTCACAGCGGTGTTGACACTGTTATTTCTGGTCCCGAGTTTAATGAGATTAATGCCCTCCACAAATTTCAGGATGTAATCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTCCTAGGCATCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATGGATGATCGGGGTTTAACCCTGGAGCAATCTTATGGGATGGATCCATCAATTGATGGAGGTAGTTCTGGTCCCTATGCAAACATTCAAGGAAAGAGTCACCTTGGTCCAATGAACTCAAGGATTACAGCTGGAGTACGTGGTATGGTTCAACCTGATAGTGATCATATTTGGCGTGGAATTATTGCAAAAGGCGGAACTCCTGTTTGCCGTGCTAGATGTATACCAATTGGGAAAGGGATTGGGTCTGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTGAGTGGACCCGAGCGATTGTATGGTGTGGTTCTGAAGTTTCCCCAATTGCCAAGTAATGCACCTATGCAACAACCATCGAACTTGCCTGTACCAACAAGTCAGTATATGCAGCAAATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTATGAAAGAGGAACAGGTTTTGTCAATGGATTATAGCAGACCATTGCATGAGGATTCTATGCTTCCTACTAAACCAGTCTACCCACCTACAGGTGGGCCTCCTTCAGTTCATTCTGTGCCTCCAGATTATGCTCCTAATAACGGTGTTGCTGGGTCCCAAGCAGGAGTTGCATTAACGCCTGAGCTGATTGCAACTCTAGCTTCTTTTCTCCCTACAACTGCACCATTATCTGCCACTGATGGTGCCAAGCCTGGAGTGGGTTCCTCCACCATGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAGGATAATCAAATTGCTGATCAAACCACTCATCCTCCTCAACAGTTGAGGAGTATGTATAACGTTCAGAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCAGCTGGCAATCCTACTCAAGTGGTCTCTAGTAGTTCTCATATCCAAGATACTGCAGCCAGCATGCATCAGCAAGGTGCTGTTTTATCTAGACACATGCCTAATTTCATGATGCCCACTCAAAGTGGACAAGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAAGTTGAAGTCTCCCCCAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAACAACCTAATAACAATTCACTGCCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCCAATTCTTCACAGCAGCAGACAGCCATGCCATATACAGTAGACCAAGTAAACCCAGACACCCCCAATCAGCAACTTTCTGTTTTTGGAGTCGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAACCAGAGGTACCAGTCAACATTACAGTTTGCAGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCCCGGGAGGACATGGACCAGGAATTCAATAA 3000 0.4467 MPLPAKPMRDSDESSSPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKANKQLWVGGISPAVTKEELEAEFCKIGKIEDFKFYRDRNTACVEYFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQATKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQPPMGRKGDGQPSNVLWIGYPPAVQIDKQMLHNAMILFGEIERIKSFPLGNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFSSGSNGPRPDVLLNEHPFRPLQMDAFGHNRPMVPNNFTGQLPPSGIMGPNVPMRPFGPHSGVDTVISGPEFNEINALHKFQDVISKSNMGPNWKRPSPPAPGMLSSPAPGPRHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNMDDRGLTLEQSYGMDPSIDGGSSGPYANIQGKSHLGPMNSRITAGVRGMVQPDSDHIWRGIIAKGGTPVCRARCIPIGKGIGSELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQLPSNAPMQQPSNLPVPTSQYMQQIPPSQTEYGLIPMKEEQVLSMDYSRPLHEDSMLPTKPVYPPTGGPPSVHSVPPDYAPNNGVAGSQAGVALTPELIATLASFLPTTAPLSATDGAKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDNQIADQTTHPPQQLRSMYNVQNAHYQPYPPASAPAGNPTQVVSSSSHIQDTAASMHQQGAVLSRHMPNFMMPTQSGQVAASPHGSQHYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLPFQQPNNSIALTNQVSGANSSQQQTAMPYTVDQVNPDTPNQQLSVFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGPGIQ* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00811 999 MobiDBLite consensus disorder prediction 1 20 - -
Phac11g00811 999 MobiDBLite consensus disorder prediction 388 419 - -
Phac11g00811 999 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 983 - -
Phac11g00811 999 SMART rrm1_1 217 285 IPR000504 GO:0003723
Phac11g00811 999 SMART rrm1_1 97 164 IPR000504 GO:0003723
Phac11g00811 999 SMART rrm1_1 20 87 IPR000504 GO:0003723
Phac11g00811 999 MobiDBLite consensus disorder prediction 695 709 - -
Phac11g00811 999 MobiDBLite consensus disorder prediction 817 832 - -
Phac11g00811 999 Pfam SPOC domain 506 623 IPR012921 -
Phac11g00811 999 FunFam Flowering time control protein FPA 11 93 - -
Phac11g00811 999 Gene3D - 210 301 IPR012677 -
Phac11g00811 999 SUPERFAMILY RNA-binding domain, RBD 96 288 IPR035979 GO:0003676
Phac11g00811 999 MobiDBLite consensus disorder prediction 805 832 - -
Phac11g00811 999 FunFam Flowering time control protein FPA isoform A 94 208 - -
Phac11g00811 999 MobiDBLite consensus disorder prediction 187 214 - -
Phac11g00811 999 SUPERFAMILY RNA-binding domain, RBD 6 93 IPR035979 GO:0003676
Phac11g00811 999 CDD RRM_SF 21 87 - -
Phac11g00811 999 MobiDBLite consensus disorder prediction 749 775 - -
Phac11g00811 999 CDD SPOC_FPA-like 511 631 - -
Phac11g00811 999 Gene3D - 94 175 IPR012677 -
Phac11g00811 999 Gene3D - 5 93 IPR012677 -
Phac11g00811 999 MobiDBLite consensus disorder prediction 433 454 - -
Phac11g00811 999 CDD RRM_SF 98 164 - -
Phac11g00811 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Phac11g00811 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Phac11g00811 999 MobiDBLite consensus disorder prediction 684 715 - -
Phac11g00811 999 MobiDBLite consensus disorder prediction 394 408 - -
Phac11g00811 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Phac11g00811 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Phac11g00811 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Phac11g00811 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00811 Phac-Chr11 5142553 5153906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00811 20 182 Eukaryotic Initiation Factors Gene Family AT2G23350 24.444 8.71e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00811 - - gmx:100777570 1803.1