Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00810 ATGCCACTTCCAGCGAAACCAATGAGGGATTCCGACGAGTCCTCGAGCCCTTCCAACAACCTGTGGGTGGGGAATCTGGCGCCGGATGTCACCGACGCCGATCTCATGGAACTTTTCGCCAAATACGGCGCACTCGACAGCGTTACCTCTTATTCTGCTCGCAGTTACGCCTTCGTCTTCTTCAAGCGCGTCGAAGATGCCAAAGCCGCAAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCAAACAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTTGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGGAATACTGCATGTGTTGAATATTTCAATTTAGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGGGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAAGCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGCCAGAAAAGACCACTGCAGCATTCACAGCCTCCAATGGGGAGGAAAGGCGATGGTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATAAACAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGGGGAATTATTCTATTGTAGAGTTTAGAAGTGTTGATGAAGCCCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAATGATCTAGTACATGGCAGTGATTACCCTGGCTTTTCTTCTGGAAGTAATGGACCGAGGCCTGATGTTTTGCTGAATGAGCATCCATTCCGACCATTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAATTACCACCTAGCGGTATTATGGGTCCAAATGTACCAATGCGACCTTTTGGTCCTCACAGCGGTGTTGACACTGTTATTTCTGGTCCCGAGTTTAATGAGATTAATGCCCTCCACAAATTTCAGGATGTAATCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTCCTAGGCATCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATGGATGATCGGGGTTTAACCCTGGAGCAATCTTATGGGATGGATCCATCAATTGATGGAGGTAGTTCTGGTCCCTATGCAAACATTCAAGGAAAGAGTCACCTTGGTCCAATGAACTCAAGGATTACAGCTGGAGTACGTGGTATGGTTCAACCTGATAGTGATCATATTTGGCGTGGAATTATTGCAAAAGGCGGAACTCCTGTTTGCCGTGCTAGATGTATACCAATTGGGAAAGGGATTGGGTCTGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTGAGTGGACCCGAGCGATTGTATGGTGTGGTTCTGAAGTTTCCCCAATTGCCAAGTAATGCACCTATGCAACAACCATCGAACTTGCCTGTACCAACAAGTCAGTATATGCAGCAAATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTATGAAAGAGGAACAGGTTTTGTCAATGGATTATAGCAGACCATTGCATGAGGATTCTATGCTTCCTACTAAACCAGTCTACCCACCTACAGGTGGGCCTCCTTCAGTTCATTCTGTGCCTCCAGATTATGCTCCTAATAACGGTGTTGCTGGGTCCCAAGCAGGAGTTGCATTAACGCCTGAGCTGATTGCAACTCTAGCTTCTTTTCTCCCTACAACTGCACCATTATCTGCCACTGATGGTGCCAAGCCTGGAGTGGGTTCCTCCACCATGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAGGATAATCAAATTGCTGATCAAACCACTCATCCTCCTCAACAGTTGAGGAGTATGTATAACGTTCAGAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCAGCTGGCAATCCTACTCAAGTGGTCTCTAGTAGTTCTCATATCCAAGATACTGCAGCCAGCATGCATCAGCAAGGTGCTGTTTTATCTAGACACATGCCTAATTTCATGATGCCCACTCAAAGTGGACAAGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAAGTTGAAGTCTCCCCCAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAACAACCTAATAACAATTCACTGCCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCCAATTCTTCACAGCAGCAGACAGCCATGCCATATACAGTAGACCAAGTAAACCCAGACACCCCCAATCAGCAACTTTCTGTTTTTGGAGTCGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAACCAGAGGTACCAGTCAACATTACAGTTTGCAGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCCCGGGAGGACATGGACCAGGAATTCAATAA 3003 0.4469 MPLPAKPMRDSDESSSPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKANKQLWVGGISPAVTKEELEAEFCKIGKIEDFKFYRDRNTACVEYFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQATKRDQLLDYGQFQGKSLGPSDAYSGQKRPLQHSQPPMGRKGDGQPSNVLWIGYPPAVQIDKQMLHNAMILFGEIERIKSFPLGNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFSSGSNGPRPDVLLNEHPFRPLQMDAFGHNRPMVPNNFTGQLPPSGIMGPNVPMRPFGPHSGVDTVISGPEFNEINALHKFQDVISKSNMGPNWKRPSPPAPGMLSSPAPGPRHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNMDDRGLTLEQSYGMDPSIDGGSSGPYANIQGKSHLGPMNSRITAGVRGMVQPDSDHIWRGIIAKGGTPVCRARCIPIGKGIGSELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQLPSNAPMQQPSNLPVPTSQYMQQIPPSQTEYGLIPMKEEQVLSMDYSRPLHEDSMLPTKPVYPPTGGPPSVHSVPPDYAPNNGVAGSQAGVALTPELIATLASFLPTTAPLSATDGAKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDNQIADQTTHPPQQLRSMYNVQNAHYQPYPPASAPAGNPTQVVSSSSHIQDTAASMHQQGAVLSRHMPNFMMPTQSGQVAASPHGSQHYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLPFQQPNNSIALTNQVSGANSSQQQTAMPYTVDQVNPDTPNQQLSVFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGPGIQ* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00810 1000 CDD SPOC_FPA-like 512 632 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 1 20 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 395 409 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 806 833 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 750 776 - -
Phac11g00810 1000 Gene3D - 211 302 IPR012677 -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 389 420 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 187 215 - -
Phac11g00810 1000 FunFam Flowering time control protein FPA 11 93 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 434 455 - -
Phac11g00810 1000 SUPERFAMILY RNA-binding domain, RBD 96 288 IPR035979 GO:0003676
Phac11g00810 1000 FunFam Flowering time control protein FPA isoform A 94 209 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 685 716 - -
Phac11g00810 1000 SUPERFAMILY RNA-binding domain, RBD 6 93 IPR035979 GO:0003676
Phac11g00810 1000 CDD RRM_SF 21 87 - -
Phac11g00810 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 290 IPR000504 GO:0003723
Phac11g00810 1000 Pfam SPOC domain 507 624 IPR012921 -
Phac11g00810 1000 Gene3D - 94 175 IPR012677 -
Phac11g00810 1000 Gene3D - 5 93 IPR012677 -
Phac11g00810 1000 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 984 - -
Phac11g00810 1000 SMART rrm1_1 218 286 IPR000504 GO:0003723
Phac11g00810 1000 SMART rrm1_1 97 164 IPR000504 GO:0003723
Phac11g00810 1000 SMART rrm1_1 20 87 IPR000504 GO:0003723
Phac11g00810 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Phac11g00810 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Phac11g00810 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 283 IPR000504 GO:0003723
Phac11g00810 1000 MobiDBLite consensus disorder prediction 696 710 - -
Phac11g00810 1000 MobiDBLite consensus disorder prediction 818 833 - -
Phac11g00810 1000 CDD RRM_SF 98 164 - -
Phac11g00810 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Phac11g00810 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00810 Phac-Chr11 5142553 5154609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00810 20 182 Eukaryotic Initiation Factors Gene Family AT2G23350 24.444 9.18e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00810 - - gmx:100777570 1798.48