Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00780 ATGGAAGATCATTTTTGCCCTAAGGGGAAGGAAACTGGCTATTGCACCTCTCCTGGGGCCCAGTTGGAGGAATCAACATCGGTTGATGGTGGCATGAAAAAATCTGCTTCAGAAGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGCTCATCTATGACTTATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCATCATATCCTCCCTCCGAGGGATTGAATTTGGTGGAACATGGCAATGGTCCATGCTTCATGACAGAAGTTATTGAAATTCACAATGGCATGGAAAGTTCTCCTAGTTGTGAGGAGAGAGGTATATTTCAGCAAATGGACATCCAACTTGGGTTCTTTGATGAAGCAAATGATTCAAACAGCTTTGATTCAAAACAAAATCGTAATGGTACATATCAGCAACTTAATACCTCAGACATGTGCAATTACTTAATCTCAAGGTCATCAGGCAGGCCACTTGATGATAGAATATTGAAGGCTTTGTCCTTCTTTATGGAATCAGTTGATGGGGAAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAGGTGTCAAGGGCATACACATTTTCTGCAGAGGGAAAGAAAGGATCTTGTCCGGGGCTTCCTGCTCGAGTGTTTATATCACATGTTCCTGAATGGACTTCCAATGTTGGTTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATTTCTGATATGCATTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAGAAACCGAATTTTGACAGAGAATTAGAAATTGTTACTCATGCACTCCAGCTTGTAAATTTAAAGACCATTACGCCTCCACGACTTCTTCCCCAGAGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATACTTGATGTGTTACGTGCCGTATGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTAGTTACAGTGAGGGAATAGGGGATGAATCTGAGAGAATACAAATCAAAGAAGGTCATACGAGTTCTAATGAAAAATGTGTGTTATGTATTGAGGAATCAGCATGCTATATAAATGATGGAGCACTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTGAGGAGTACCTATACTAATGATGATGATTACATATTAGAATTCTTTCTGCCGGTGACCATGACAGGGAGTTCAGAACAACAACTTTTATTGGATAATCTCTCAGGTACCATGCGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGGATCCGTAGTTGAGTTTCCAAAGGAAAAAGCCACGTATTTTTTTCCCATGTCCAAGAGAAACTCTCAGATAGCATTTATAAATGATGATCATGATTCGGTCCAGAAAATGTCCTTGAAAGCATCTAACAATGGAATTGAAGCTGTTCATAGCCAGGTAGTGAATGGAACAAGAAAACAGATTGAGAAAAAGAGAAGCACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAGTACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGCTTATAGCTGGAGGATCAATAATGCAAGAAATTGACACACATAAATATATTCTGTTTCCTGAGAAAAGTGCTGTAAAAGACCCTAAGCATGCAACACAAAAATCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATAATGATGATGGTGTTTGTTTGGTGGGAAACAAGCTTGTGCATTCAAGAAGTGTACTTATATCTGATACCAGTGAGGGAGGATTGAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGGCAGCAAACGGGCCAAGAATCAGGATTGCCCTGATCAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGAGTAGATGGGGGAGAGGGAATTGATGAACATAACCACCTTAATTCTTCAAGCACTACACACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCACGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAATCAACTTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGATGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTCATTCCAGCTCAAATATCTAGATGACGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCATGAATGTATAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTCGTGGCAGCAACAATTGCTTCTTGTCAGACAGTTCGTAG 2907 0.4049 MEDHFCPKGKETGYCTSPGAQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTYQSLANVFSSFSSASYPPSEGLNLVEHGNGPCFMTEVIEIHNGMESSPSCEERGIFQQMDIQLGFFDEANDSNSFDSKQNRNGTYQQLNTSDMCNYLISRSSGRPLDDRILKALSFFMESVDGEMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAYTFSAEGKKGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLDHALNHEIRGSIALPISDMHSQVPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTITPPRLLPQSLSSNKRAALTEILDVLRAVCHAHRLPLALTWIPCSYSEGIGDESERIQIKEGHTSSNEKCVLCIEESACYINDGALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVTMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAELTGIEGSVVEFPKEKATYFFPMSKRNSQIAFINDDHDSVQKMSLKASNNGIEAVHSQVVNGTRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGLIAGGSIMQEIDTHKYILFPEKSAVKDPKHATQKSVSVVSAPGSTSENSTIKLDNDDGVCLVGNKLVHSRSVLISDTSEGGLKKDNASSDDCCEDSKSVAMNDGSSQKGSKRAKNQDCPDQTCSISLVTDEVEVGVDGGEGIDEHNHLNSSSTTHSSNGSGSMMHGSSSRSQSFENQKHSKVKSTCVDSGSKMIVKASYRGDTIRFKFDPSAGCFQLYDEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLHECIEILDDIGTRCVKFLVRDVPCVLSSRGSNNCFLSDSS* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00780 968 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Phac11g00780 968 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Phac11g00780 968 ProSiteProfiles RWP-RK domain profile. 586 667 IPR003035 -
Phac11g00780 968 MobiDBLite consensus disorder prediction 813 858 - -
Phac11g00780 968 MobiDBLite consensus disorder prediction 821 858 - -
Phac11g00780 968 CDD PB1_NLP 869 949 IPR034891 -
Phac11g00780 968 PANTHER PROTEIN NLP8 134 959 IPR045012 GO:0003700
Phac11g00780 968 SMART PB1_new 868 950 IPR000270 GO:0005515
Phac11g00780 968 MobiDBLite consensus disorder prediction 754 794 - -
Phac11g00780 968 Gene3D - 865 947 - -
Phac11g00780 968 Pfam RWP-RK domain 599 647 IPR003035 -
Phac11g00780 968 MobiDBLite consensus disorder prediction 769 794 - -
Phac11g00780 968 SUPERFAMILY CAD & PB1 domains 863 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00780 Phac-Chr11 5038513 5044703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00780 1 964 NLP Transcription Factor Family AT2G43500 49.642 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac11g00780 PB1 3.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00780 - - gmx:100793770 1612.05