LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g00766	ATGCAAAATGGTTGGCCACAATTTCTGAATGACAACTCAGTGATGCTTGATGATTTCTTGCTCTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATCTTTGGTAAGAATGGATTGGAGAGGCTGTGTTTCAAACAAACAAGACAAGATCAAGTTCTGATTCCAAGTTTGGTGAGGACAAAGAAGAGCACACAGAGAAGAACTTTTGCCAGTTCATTCCTCCACCAAGCCAAGTCTTGTAAAAAAGGTCTGTCTTTCAGCAACAAAATCTCATTTTCTAAGGACTTCCAAAAGCTCAAGAGCTCAATTAAGATTGAAAGCACAGAAGCCTGCAACTTGGCAGACTCTTTTACCTCTCGCAATCCTCATTGGAAGCATCTCATGACAAAATGCAATGTAGAAGATCACTGCACATTGCCAATTGCCACGGAGTTTGCCAGGAAGCATATTCCTGAAGCAGTGAAACAGATCATTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTGGTGACTTGGTTTGGATGTCAGAATAAGAGGGAAGGCATTGTCGTTTTATTCTTAATAAGGAGAGCTATAGATGGAGGTGGCGTAGCTGTGTTTGTTTCCACAAGACACTCAAGTTGCTTCTATGCTCCACAGCTCAACTCTGTCAACTGCTTGATGACTAGTGGTGCCAAGAAATACCCTCAGTTCTTCAAAATCTTCCTTCCAGAGCAAGATTCTCACATAATGAAGGTTCCAAAGGAGTTTTTGAAGCACTTGGATGAAGACTTGTCGAGTAATGCTGTTCTTAGTGGCCCTTCTTCTGGTGAGCAGTGGCAAGTAAGTGTTCTGAAGAAAGGAAATGATGTGTATATGCAAAATGGTTGGCCAGAATTTGTGACAGACAACTTAGTAGTGCTTAATGAGTTCTTGCTTTTCACATATCATGGAGACAACTGCTTCCATGTTCAAACTTTTGGTAAGAATGGATTGGAGAGGTTATGCCTCAGAGAAACAAGACAAGAACAAGCTGCTGCCATCCCAAAGAAGAGTACACAAACTTTTGCAGATACACCTTTCAGCAACAAAGGCTTCGTTTTTACTGGATGTGAGACAATGGAAACAAGACAAAAACAAACTGCCACCCCAAGTTTGTCAAGAACAAAGAAGAACAAAGAAAGGAAGTTTTCTCCGGGTGCATCACACCTCCATGAATCGAAGTCTTATCAACAAGATTTGTCCTTCAGCAACAAAGCCTCTTTTTCGAAGGACTTCCCAACTCCTCAGCATTCAATTGAAATTGAAAGTTCGGAAGCATGGAAATTGGCTGAGTCCTTTACCTCTTGCAATCCTCATTGGAAGCACCTCATGACAAAATCTAATGTGGAAGATTGTTGCATATTGCCTATTGCTACTGAGTTTGCTAGAAAGTATATTCCTGAAGCAGTGAAACAGATCCACATTGAAAATTGTAAAGGAAAATCTTGGAAAGTGCAAGTGAATTGTTTCAAAAATCAAGATAGAAGATATGCTCAGTTAACAAAAGGATGGGTAAATTTCGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAGACTTCCATTTGAGGGTTCACATATTCAGAACCAGATGTGCACCACGTTAA	1653	0.4035	MQNGWPQFLNDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKSTQRRTFASSFLHQAKSCKKGLSFSNKISFSKDFQKLKSSIKIESTEACNLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPEAVKQIILWNTEGKFWEVVVTWFGCQNKREGIVVLFLIRRAIDGGGVAVFVSTRHSSCFYAPQLNSVNCLMTSGAKKYPQFFKIFLPEQDSHIMKVPKEFLKHLDEDLSSNAVLSGPSSGEQWQVSVLKKGNDVYMQNGWPEFVTDNLVVLNEFLLFTYHGDNCFHVQTFGKNGLERLCLRETRQEQAAAIPKKSTQTFADTPFSNKGFVFTGCETMETRQKQTATPSLSRTKKNKERKFSPGASHLHESKSYQQDLSFSNKASFSKDFPTPQHSIEIESSEAWKLAESFTSCNPHWKHLMTKSNVEDCCILPIATEFARKYIPEAVKQIHIENCKGKSWKVQVNCFKNQDRRYAQLTKGWVNFVRDNKLMRGDTCIFELEEDFHLRVHIFRTRCAPR*	551

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g00766	550	Pfam	B3 DNA binding domain	452	545	IPR003340	GO:0003677
	Phac11g00766	550	Pfam	B3 DNA binding domain	233	324	IPR003340	GO:0003677
	Phac11g00766	550	MobiDBLite	consensus disorder prediction	383	397	-	-
	Phac11g00766	550	SMART	B3_2	233	325	IPR003340	GO:0003677
	Phac11g00766	550	SMART	B3_2	449	546	IPR003340	GO:0003677
	Phac11g00766	550	ProSiteProfiles	B3 DNA-binding domain profile.	231	325	IPR003340	GO:0003677
	Phac11g00766	550	SUPERFAMILY	DNA-binding pseudobarrel domain	445	548	IPR015300	-
	Phac11g00766	550	CDD	B3_DNA	231	322	IPR003340	GO:0003677
	Phac11g00766	550	PANTHER	B3 DOMAIN-CONTAINING	1	178	-	-
	Phac11g00766	550	Gene3D	-	224	326	IPR015300	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g00766	246	545	B3 DNA Binding Superfamily	AT3G18990	25.915	2.71e-26	108

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Phac11g00766		B3	9.1e-18	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g00766	-		-	pvu:PHAVU_011G050700g	642.499

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