Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00764 ATGAGGAAATATGGGGGGGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTGTTGGTTCCTTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGGGTTGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATGCGATGTAGTAATGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATGGATGATGAAGATTCTATTGAAATCTTGGATTCATCACCATCCCATCTTGTTCCCAGTTCATTGCAAAATAAAGTTCTTGCTGGATCAGTAGATAAAATGTCGCCTGCAAAGTGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTAGTGATGCGCATTGTTCGAAAAGTGCCAATTCCCTGGATAATCGATTGACAAGAGACATAGGTGTTCAATTTAATGCAGTTGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATGGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGAGGGACTGGAAGCCTCTGCTGAACAAGAAGAGGAAGTTGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTAAGGCCCTCCTATCTATACAGAGGATGTATAATGTATCTGCCATCCTGTTTTGCAGAAAAACATTTGAATGGAGTTTCGGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTGTATAGGGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTAGCATCTTTCGCATTACTGAGGATGTGGGATTGTTGAGCCCTCCTCCTTTGCAGCAGAATCAAAAGATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACACCTTACTTCAACTAAAATGATTAGAAATTAG 1215 0.4082 MRKYGGELSPIVTLSVPDGSVWRVGLKKADNKCWFLDGWQEFIQHYSIGVGYLLVFRYEGKSSFNVHVFNLATSEINYQSAMRCSNEGPHFANLLKFFEEMDDEDSIEILDSSPSHLVPSSLQNKVLAGSVDKMSPAKCYTPPALQNLFNGSKLNSINWGEGSDAHCSKSANSLDNRLTRDIGVQFNAVEFKRSTEELKLRASMEERMKKTARKKRKSEGLEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVSIFRITEDVGLLSPPPLQQNQKMSSAKLLNTPLQQHLTSTKMIRN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00764 404 SUPERFAMILY DNA-binding pseudobarrel domain 263 364 IPR015300 -
Phac11g00764 404 SMART B3_2 270 365 IPR003340 GO:0003677
Phac11g00764 404 SMART B3_2 1 72 IPR003340 GO:0003677
Phac11g00764 404 Gene3D - 247 367 IPR015300 -
Phac11g00764 404 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Phac11g00764 404 PANTHER B3 DOMAIN-CONTAINING 2 353 - -
Phac11g00764 404 ProSiteProfiles B3 DNA-binding domain profile. 270 365 IPR003340 GO:0003677
Phac11g00764 404 Gene3D - 1 72 IPR015300 -
Phac11g00764 404 SUPERFAMILY DNA-binding pseudobarrel domain 2 70 IPR015300 -
Phac11g00764 404 Pfam B3 DNA binding domain 273 363 IPR003340 GO:0003677
Phac11g00764 404 Pfam B3 DNA binding domain 4 69 IPR003340 GO:0003677
Phac11g00764 404 CDD B3_DNA 268 363 IPR003340 GO:0003677
Phac11g00764 404 CDD B3_DNA 1 70 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00764 Phac-Chr11 4917151 4921141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00764 1 369 B3 DNA Binding Superfamily AT3G18990 51.070 1.41e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac11g00764 B3 5.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00764 - - var:108340232 735.717