Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00760 ATGAGTGGTGCGGAGAAGTACCCAGATTTCTTCAAAGTCTTCCTTCAAGAACAACACTACGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGCATGGGTTACAGGGAAGGATCCCTGAGGATGTTCTCCTCAGGAATCGTAGTGAGAGAGTGTGGCATGTTAAAACACGTTTTTTTGGAGACAGATTATATTTCGATGATGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAGGAAATGCAGATTTTCTAGTATTCAGATATGACGGGGTTAATGAGTTCAGGGTCACAATCCTTGAAATATCAACGCAGTGTGAGAAAACTCTGGTAAAGATTGAGGAGGAGGAGGAGGGGAATGAAGAAGAGAAAGCAGCTGCGCAAGTTGAAGAGACAGTGATAACACAGGAGGAGCAAGCTGAGGACTGTGACATAGAGGACGAGGAAGACAGCCAAGATCAGGACTACGATGACGACAATGACGATAGTGATTTTGAGGATGATGATGATGATGATGAGAACACAGAGATGGAAGAAGAGAGTGAAGAAGAAAACAGTGTTGGCCCTGTTGGATACGCGAGTCAACGTTATCACAAAACTTGCAGAAGGGACACTGCATCAAGTTCCTACCCCCAGACTGAAGAAGACACTTTCAAAGACGATGAATTTGATCCTGAAATGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCCCTTAGTTTTCCTGAAAAGATTACCCTTAAATGTTGCCAACACTGCCAGCGTAAGGATATTCAAAGAAACCAATTGCAAGACTATCATCTCAACTTGGCACAACAGGCACCCATCAGAAAAAGATATTTAGAAGTGACAGGAAAAGTGTGTAGGTGGCAAGATGATAGAATATGTATCAAGGGTTGGGCTAACTTTAGCAGAAGAAACAAGATAAAAAATAATGATGTATGCATCTGTGAAGTTATATCAGGGGAAGACCAAGTAGTAAGAACCTTTCTGGTGCACGTTATTGGTACTAGGAGGGAATAG 1086 0.4134 MSGAEKYPDFFKVFLQEQHYERMLIPNAFVKLHGLQGRIPEDVLLRNRSERVWHVKTRFFGDRLYFDDGWKIFHEENCLGNADFLVFRYDGVNEFRVTILEISTQCEKTLVKIEEEEEGNEEEKAAAQVEETVITQEEQAEDCDIEDEEDSQDQDYDDDNDDSDFEDDDDDDENTEMEEESEEENSVGPVGYASQRYHKTCRRDTASSSYPQTEEDTFKDDEFDPEMCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNQLQDYHLNLAQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISGEDQVVRTFLVHVIGTRRE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00760 361 CDD B3_DNA 8 100 IPR003340 GO:0003677
Phac11g00760 361 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Phac11g00760 361 PANTHER B3 DOMAIN-CONTAINING 5 344 - -
Phac11g00760 361 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Phac11g00760 361 SMART B3_2 10 103 IPR003340 GO:0003677
Phac11g00760 361 Gene3D - 219 358 IPR015300 -
Phac11g00760 361 MobiDBLite consensus disorder prediction 137 225 - -
Phac11g00760 361 Coils Coil 110 132 - -
Phac11g00760 361 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Phac11g00760 361 Gene3D - 2 106 IPR015300 -
Phac11g00760 361 MobiDBLite consensus disorder prediction 137 185 - -
Phac11g00760 361 SUPERFAMILY DNA-binding pseudobarrel domain 306 357 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00760 Phac-Chr11 4911148 4915796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00760 1 355 B3 DNA Binding Superfamily AT3G06160 24.100 2.54e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac11g00760 B3 2.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00760 - - var:108340234 535.413