Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00744 ATGAAAGATGATAATATTAAAAAAAAGGATAAAAAAGAGAAACACAGAACCACAGTCAACGCTTTGTATGTGGTGTTTGCATTAAACCCAATTGCACAGTTTTCTCTTTCACTAAATTTTCTACAACTAAAACCCTACTCTTCTGCTATTCTTCTTCTTCTTCTTCCCATTCTCATCAACACCATCACCATCATGCCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCATCTCCATCTCCAACACCAATATTCAAAAAATCATTCTTGCCACCACCATCCAACTCGCCGGCGGTTGACTTCAGCCCCCCCTTGATAGCAATGGTCGTAGTCGTCGCTGCCGCCTTTCTCGTCGTAACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCGCCACTTCACCGCCTCCTCCACCGCTTCCGGCGGCGGAGATTCCCTCCGTCTTCCGTCGGCGACCTCGAGTCCCTACCCTACGAGTCTCCCTTTGACGGCTCGCGCGTCTTCTCTCCCTACGGCTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTTTACACCGCCAAATACGACGCGCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGACTACGTGAGAACGCTTCCCGTCTGTTCACACACGTTCCACGTGGACTGCATCGATGCGTGGCTTCGATCGCACGCTAACTGCCCTCTCTGCCGCGCTGGAGTCCTCTGCGTCGATTCGCCTTTCACTCCGATGATGGCCGCAAGAATCCGACCAAGCCTCGACGACGACACAATTCTCCATCGCATTAGCTTAGACCCTCTCCTCGATCCCCCACCGCCTCTGGCAATCTCCGCCGTGCCGGAGATAACGCCCTGCGTCGACGAGCAATCTCCGAGGAGGAACCAGAACCACGCGAACGTTAACTCGGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCGCCACTGCGTCGCCGTGGCGGTACCGAAGAGGGAGTAACAGCTTCTGGAGCAAGAGGCCGTCGCCGTTTGGGTCTTTGGGGAAACCGAGGGTGTTTTCATTTCGGTATTATAGAGGGATGAAATCACCGTTCTTCCGGCGGAGGGGATTTTTCCCGCTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGCTCATCGCGGCGGAGCAAGTCGATTGCCAGCCCAATGTTTCTGCGGTCGTCGGGGCTGGCAGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTATCGCCGGAGAGATTTAACCGGAGGTGA 1374 0.5531 MKDDNIKKKDKKEKHRTTVNALYVVFALNPIAQFSLSLNFLQLKPYSSAILLLLLPILINTITIMPPSQPPHWAPSPSPSPSPTPIFKKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPLHRLLHRFRRRRFPPSSVGDLESLPYESPFDGSRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCVDSPFTPMMAARIRPSLDDDTILHRISLDPLLDPPPPLAISAVPEITPCVDEQSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSVASERMVMEAATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00744 457 SMART ring_2 203 244 IPR001841 -
Phac11g00744 457 Pfam Ring finger domain 201 245 IPR001841 -
Phac11g00744 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 249 IPR013083 -
Phac11g00744 457 FunFam RING-H2 finger protein ATL65 168 249 - -
Phac11g00744 457 PANTHER RING-H2 FINGER PROTEIN ATL16 92 265 IPR044600 GO:0016567|GO:0016740
Phac11g00744 457 SUPERFAMILY RING/U-box 187 251 - -
Phac11g00744 457 ProSiteProfiles Zinc finger RING-type profile. 203 245 IPR001841 -
Phac11g00744 457 CDD RING-H2_EL5-like 202 245 - -
Phac11g00744 457 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00744 Phac-Chr11 4799428 4802287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00744 96 457 C3H Transcription Factor Family AT3G18930 51.880 5.40e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00744 - K19041 gmx:100795347 627.091