Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00727 ATGGAGGATTATGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCTTATGAAAACGACGAGGATTACGCGTTGCTATCTTCCAAGGGTCCCACTACTAAGGTGATTACAAAGGAATCACTTTTGGTTGCACAGAAGGAGGATTTGCGCAGAGTGATGGAGATGCTATCGGTAAGAGAGCAACATGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTAGTGTGGATCAGCATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTCCTAGGGTTGAAACAACAAGAATGGACTGTAGTCACTGCTTTTGCAACTCCTGTTGGATTGAACATTTTATTGTTAAAATAAACGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTCGTTAGAACTCTACTCAGTAGAAAGCACCCTGGTATGGCAGAGAAATATGAACGTTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGCGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAACGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAATCGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTTAATAATGGACTTTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGACGCACAGAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCACCCTCTCAACAATTATTGATAAGCTTTGTCAGAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTTCATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCGGAACTTTCGGTTTGCTGGAACAACAAAGTCAATACTGGTGTAACAGCTGAACTTGATCGGCCTTCCGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGAGCTAGAAAAGATGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCGGCAGAGTTTGTAGACAGGAATTGA 1737 0.4174 MEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVSVDQHPDSDSSVPSTVMCYICMEDVPRVETTRMDCSHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPGMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKSAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILTLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTGVTAELDRPSGSGSSDDNGCSSRKRARKDGLGGGFFDLNLPAEFVDRN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00727 578 MobiDBLite consensus disorder prediction 534 554 - -
Phac11g00727 578 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Phac11g00727 578 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Phac11g00727 578 MobiDBLite consensus disorder prediction 1 20 - -
Phac11g00727 578 SMART ibrneu5 261 326 IPR002867 GO:0008270
Phac11g00727 578 SMART ibrneu5 191 253 IPR002867 GO:0008270
Phac11g00727 578 MobiDBLite consensus disorder prediction 534 549 - -
Phac11g00727 578 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
Phac11g00727 578 SUPERFAMILY RING/U-box 191 259 - -
Phac11g00727 578 Gene3D - 249 496 - -
Phac11g00727 578 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
Phac11g00727 578 SUPERFAMILY RING/U-box 116 203 - -
Phac11g00727 578 SUPERFAMILY RING/U-box 261 318 - -
Phac11g00727 578 Pfam Ariadne domain 330 578 IPR045840 -
Phac11g00727 578 CDD Rcat_RBR_ARI1-like 274 327 - -
Phac11g00727 578 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Phac11g00727 578 CDD RING-HC_RBR_TRIAD1 118 171 - -
Phac11g00727 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 206 IPR013083 -
Phac11g00727 578 CDD BRcat_RBR_ANKIB1 198 262 - -
Phac11g00727 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 394 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00727 Phac-Chr11 4742400 4746327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00727 60 542 ARIADNE family AT2G16090 70.637 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00727 K11968 - gmx:100783343 1085.86