Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g00689 ATGTCTGTTGCGGAGCTCAAGGAGCGTCACTCCGCGGCCATCGACACCGTCAACAATCTCAGGCACCGATTAAAGCAGAAGCGTCTTTCTTTGCTCGACACCGATATCTGCGAGTATGCGAGGTCTCAGGGTAGAACACCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGTAGAACTTTGCAGGGTCACACGGGGAAGGTGTATTCGTTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGTGCATCTCAAGATGGGCGATTAATAGTGTGGAATGCTCTAACTAGGCAGAAAATCCATGCCATAAAGCTGCCTTGTGCGTGGGTCATGACATGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTTGACAGTGTTTGTTCTATTTTCCATCTAAATTCACCCACTGACAAAGATGGGAATCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACTGGCCTTAAAACATCTGTCTTTGGAGGAGAGTTCCAGTCTGGACATACTGCAGATGTATACAGGTTTGGAACCGGCTCAGAGGATGGTACCTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATATTATCAGCAGCACAGTGACAATGACATCCCGCCTGTGACTTCCATTGCATTCTCTGCTTCAGGAAGACTTCTTTTTGCTGGATACACAAATGGAGATTGCTATGTTTGGGATACTTTACTGGCAAAGGTGGTCTTGAATTTAGGATCTCTCCAAGACTCTCATGATGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAAGACGACTTGA 975 0.4503 MSVAELKERHSAAIDTVNNLRHRLKQKRLSLLDTDICEYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFHLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVYRFGTGSEDGTCRLFDIRTGHQLQVYYQQHSDNDIPPVTSIAFSASGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQDSHDDRISCLGLSADGSALCTGSWDTNLKIWAFGGHRKTT* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 324 - -
Phac11g00689 324 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 207 IPR016346 GO:0007165
Phac11g00689 324 CDD WD40 57 316 - -
Phac11g00689 324 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Phac11g00689 324 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Phac11g00689 324 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 315 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 96 135 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 145 185 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 226 270 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 192 223 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 276 316 IPR001680 GO:0005515
Phac11g00689 324 SMART WD40_4 54 93 IPR001680 GO:0005515
Phac11g00689 324 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Phac11g00689 324 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Phac11g00689 324 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Phac11g00689 324 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Phac11g00689 324 SUPERFAMILY WD40 repeat-like 53 315 IPR036322 GO:0005515
Phac11g00689 324 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Phac11g00689 324 Pfam WD domain, G-beta repeat 234 270 IPR001680 GO:0005515
Phac11g00689 324 Pfam WD domain, G-beta repeat 286 315 IPR001680 GO:0005515
Phac11g00689 324 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Phac11g00689 324 Gene3D - 206 316 IPR015943 GO:0005515
Phac11g00689 324 Gene3D - 11 205 IPR015943 GO:0005515
Phac11g00689 324 Coils Coil 3 23 - -
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Phac11g00689 324 PIRSF GNBP_B 207 318 - -
Phac11g00689 324 PIRSF GNBP_B 1 209 - -
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Phac11g00689 324 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Phac11g00689 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g00689 Phac-Chr11 4484132 4488570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g00689 46 317 U-box Gene Family AT1G04510 24.653 5.37e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g00689 K04536 - cave:132175241 498.819